Rfam 10.0 : Browse Rfam families (Janelia)

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Name	Accession	No.seed	Av.len(seed)	Av.%id(seed)	No.full	Av.len(full)	Av.%id(full)	Type	Description
5S_rRNA	RF00001	712	116	59	116760	114	59	Gene; rRNA;	5S ribosomal RNA
5_8S_rRNA	RF00002	61	152	70	225185	153	81	Gene; rRNA;	5.8S ribosomal RNA
U1	RF00003	100	162	65	11210	155	61	Gene; snRNA; splicing;	U1 spliceosomal RNA
U2	RF00004	211	190	56	7509	163	51	Gene; snRNA; splicing;	U2 spliceosomal RNA
tRNA	RF00005	967	73	45	1101833	71	54	Gene; tRNA;	tRNA
Vault	RF00006	75	100	58	430	101	61	Gene;	Vault RNA
U12	RF00007	63	161	62	322	148	65	Gene; snRNA; splicing;	U12 minor spliceosomal RNA
Hammerhead_3	RF00008	84	55	69	1138	63	67	Gene; ribozyme;	Hammerhead ribozyme (type III)
RNaseP_nuc	RF00009	117	312	48	566	287	40	Gene; ribozyme;	Nuclear RNase P
RNaseP_bact_a	RF00010	306	380	62	4081	351	62	Gene; ribozyme;	Bacterial RNase P class A
RNaseP_bact_b	RF00011	114	367	68	538	359	68	Gene; ribozyme;	Bacterial RNase P class B
U3	RF00012	26	219	50	4544	163	45	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U3
6S	RF00013	154	180	45	1700	176	44	Gene;	6S / SsrS RNA
DsrA	RF00014	5	85	82	96	85	92	Gene; sRNA;	DsrA RNA
U4	RF00015	178	144	57	5596	128	59	Gene; snRNA; splicing;	U4 spliceosomal RNA
SNORD14	RF00016	18	110	66	999	95	62	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD14
SRP_euk_arch	RF00017	102	296	49	13082	286	51	Gene;	Eukaryotic type signal recognition particle RNA
CsrB	RF00018	14	345	70	368	268	61	Gene; sRNA;	CsrB/RsmB RNA family
Y_RNA	RF00019	116	99	61	14651	102	54	Gene;	Y RNA
U5	RF00020	181	117	50	3444	113	63	Gene; snRNA; splicing;	U5 spliceosomal RNA
Spot_42	RF00021	19	117	78	235	116	86	Gene; sRNA;	Spot 42 RNA
GcvB	RF00022	26	201	60	223	201	67	Gene;	GcvB RNA
tmRNA	RF00023	222	365	50	3061	357	48	Gene;	transfer-messenger RNA
Telomerase-vert	RF00024	37	444	58	233	282	55	Gene;	Vertebrate telomerase RNA
Telomerase-cil	RF00025	20	174	52	28	154	50	Gene;	Ciliate telomerase RNA
U6	RF00026	200	107	72	48510	103	74	Gene; snRNA; splicing;	U6 spliceosomal RNA
let-7	RF00027	57	79	64	796	82	66	Gene; miRNA;	let-7 microRNA precursor
Intron_gpI	RF00028	30	322	36	39049	349	58	Intron;	Group I catalytic intron
Intron_gpII	RF00029	98	87	54	29255	76	56	Intron;	Group II catalytic intron
RNase_MRP	RF00030	67	321	46	496	283	36	Gene; ribozyme;	RNase MRP
SECIS	RF00031	61	64	43	1125	64	45	Cis-reg;	Selenocysteine insertion sequence
Histone3	RF00032	64	26	77	9816	25	79	Cis-reg;	Histone 3' UTR stem-loop
MicF	RF00033	4	92	81	152	91	80	Gene; antisense;	MicF RNA
RprA	RF00034	14	108	65	198	104	69	Gene; sRNA;	RprA RNA
OxyS	RF00035	5	109	92	115	110	92	Gene; sRNA;	OxyS RNA
RRE	RF00036	65	337	97	22764	279	87	Cis-reg;	HIV Rev response element
IRE	RF00037	39	28	61	2290	29	72	Cis-reg;	Iron response element
PrfA	RF00038	11	131	87	282	130	99	Cis-reg; thermoregulator;	PrfA thermoregulator UTR
DicF	RF00039	5	51	74	141	51	80	Gene; antisense;	DicF RNA
rne5	RF00040	6	345	64	174	315	75	Cis-reg;	RNase E 5' UTR element
Entero_OriR	RF00041	60	121	88	151	118	84	Cis-reg;	Enteroviral 3' UTR element
CopA	RF00042	37	90	80	153	90	83	Gene; antisense;	CopA-like RNA
Plasmid_R1162	RF00043	8	73	79	21	70	79	Gene; antisense;	R1162-like plasmid antisense RNA
Phage_pRNA	RF00044	3	244	98	8	193	79	Gene;	Bacteriophage pRNA
SNORA73	RF00045	53	210	75	802	189	61	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA73 family
snoR30	RF00046	6	95	88	76	95	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R30/Z108
mir-2	RF00047	56	69	68	235	70	67	Gene; miRNA;	mir-2 microRNA precursor
Entero_CRE	RF00048	56	61	82	529	60	82	Cis-reg;	Enterovirus cis-acting replication element
SNORD36	RF00049	61	74	66	435	75	61	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD36
FMN	RF00050	146	136	72	1789	139	68	Cis-reg; riboswitch;	FMN riboswitch (RFN element)
mir-17	RF00051	54	81	72	316	82	70	Gene; miRNA;	mir-17 microRNA precursor family
lin-4	RF00052	9	69	72	210	69	75	Gene; miRNA;	lin-4 microRNA precursor
mir-7	RF00053	60	87	65	212	88	69	Gene; miRNA;	mir-7 microRNA precursor
SNORD25	RF00054	8	80	63	115	78	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD25
SNORD96	RF00055	9	87	62	139	86	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD96 family
SNORA71	RF00056	40	132	80	402	129	71	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA71
RyhB	RF00057	28	65	74	323	65	76	Gene; sRNA;	RyhB RNA
HgcF	RF00058	4	168	90	8	169	86	Gene;	HgcF RNA
TPP	RF00059	115	111	56	5398	107	55	Cis-reg; riboswitch;	TPP riboswitch (THI element)
HgcE	RF00060	4	130	82	8	129	78	Gene;	HgcE RNA
IRES_HCV	RF00061	79	246	86	6496	204	92	Cis-reg; IRES;	Hepatitis C virus internal ribosome entry site
HgcC	RF00062	5	134	70	71	119	51	Gene;	HgcC family RNA
SscA	RF00063	5	96	74	9	96	73	Gene;	SscA RNA
HgcG	RF00064	4	275	82	9	275	72	Gene;	HgcG RNA
snoR9	RF00065	5	127	85	8	122	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR9
U7	RF00066	56	60	59	5079	59	64	Gene; snRNA;	U7 small nuclear RNA
SNORD15	RF00067	18	124	59	267	118	57	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD15
SNORD21	RF00068	5	92	73	91	87	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD21
SNORD24	RF00069	14	77	71	307	80	65	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD24
SNORD29	RF00070	10	73	76	110	69	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD29
SNORD73	RF00071	25	70	77	112	69	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD73
SNORA75	RF00072	6	135	74	191	129	66	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA75
mir-156	RF00073	10	89	72	387	88	71	Gene; miRNA;	mir-156 microRNA precursor
mir-29	RF00074	10	67	75	302	67	78	Gene; miRNA;	mir-29 microRNA precursor
mir-166	RF00075	30	122	57	369	120	56	Gene; miRNA;	mir-166 microRNA precursor
mir-181	RF00076	19	75	82	180	75	82	Gene; miRNA;	mir-181 microRNA precursor
SraB	RF00077	5	168	87	102	160	86	Gene; sRNA;	SraB RNA
SraD	RF00078	10	75	88	160	75	89	Gene; sRNA;	SraD RNA
SraE_OmrA_OmrB	RF00079	16	88	71	260	86	79	Gene; sRNA;	SraE_OmrA_OmrB family RNA
yybP-ykoY	RF00080	25	123	49	983	122	47	Cis-reg;	yybP-ykoY leader
SraH	RF00081	9	107	79	161	104	74	Gene; sRNA;	SraH RNA
SraG	RF00082	7	172	73	166	171	83	Gene; sRNA;	SraG RNA
GlmZ_SraJ	RF00083	21	211	78	310	198	67	Gene; sRNA;	GlmZ RNA activator of glmS mRNA
CsrC	RF00084	4	253	82	118	250	89	Gene; sRNA;	CsrC RNA family
SNORD28	RF00085	20	76	75	90	73	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD28
SNORD27	RF00086	11	76	70	168	75	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD27
SNORD26	RF00087	17	74	80	62	74	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD26
SNORD30	RF00088	20	69	81	83	68	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD30
SNORD31	RF00089	26	68	78	194	69	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD31
SNORA74	RF00090	23	199	79	274	183	52	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA74
SNORA62	RF00091	10	152	82	474	141	62	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA62/SNORA6 family
SNORA63	RF00092	8	128	79	483	121	61	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA63
SNORD18	RF00093	16	74	69	355	75	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD18
HDV_ribozyme	RF00094	33	91	74	538	91	81	Gene; ribozyme;	Hepatitis delta virus ribozyme
snoPyro_CD	RF00095	25	56	60	69	56	61	Gene; snRNA; snoRNA; CD-box;	Pyrococcus C/D box small nucleolar RNA
U8	RF00096	49	135	66	561	128	60	Gene; snRNA; snoRNA; CD-box;	U8 small nucleolar RNA
snoR71	RF00097	25	107	83	8199	106	64	Gene; snRNA; snoRNA; CD-box;	Plant small nucleolar RNA R71
SNORD22	RF00099	49	125	81	230	118	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD22
7SK	RF00100	45	322	82	15656	275	52	Gene;	7SK RNA
SraC_RyeA	RF00101	13	146	87	187	144	76	Gene; sRNA;	SraC/RyeA RNA
VA	RF00102	54	161	69	438	137	68	Gene;	VA RNA
mir-1	RF00103	67	76	68	234	76	68	Gene; miRNA;	mir-1 microRNA precursor family
mir-10	RF00104	11	74	59	406	73	66	Gene; miRNA;	mir-10 microRNA precursor family
SNORD115	RF00105	32	80	90	2447	79	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD115
RNAI	RF00106	10	102	73	2383	99	88	Gene; antisense;	RNAI
FinP	RF00107	6	77	91	60	77	90	Gene;	FinP
SNORD116	RF00108	48	93	83	1434	92	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD116
Vimentin3	RF00109	19	68	75	178	65	83	Cis-reg;	Vimentin 3' UTR protein-binding region
RybB	RF00110	8	79	81	161	79	88	Gene; sRNA;	RybB RNA
RyeB	RF00111	18	97	73	245	98	72	Gene; sRNA;	RyeB RNA
CyaR_RyeE	RF00112	18	86	80	161	85	84	Gene; sRNA;	CyaR/Rye RNA
QUAD	RF00113	17	147	71	473	147	74	Gene; sRNA;	QUAD RNA
S15	RF00114	79	116	63	406	116	63	Cis-reg; leader;	Ribosomal S15 leader
IS061	RF00115	8	180	93	63	175	90	Gene; sRNA;	IS061 RNA
C0465	RF00116	8	77	99	55	77	100	Gene; sRNA;	C0465 RNA
C0719	RF00117	9	222	98	41	219	96	Gene; sRNA;	C0719 RNA
rydB	RF00118	7	67	93	105	67	96	Gene; sRNA;	rydB RNA
C0299	RF00119	5	79	97	57	78	97	Gene; sRNA;	C0299 RNA
C0343	RF00120	7	75	85	114	74	88	Gene; sRNA;	C0343 RNA
MicC	RF00121	8	122	68	112	118	78	Gene; sRNA;	MicC RNA
GadY	RF00122	5	113	99	62	113	99	Gene; sRNA;	GadY
IS102	RF00124	5	205	90	71	153	63	Gene; sRNA;	IS102 RNA
IS128	RF00125	5	210	89	20	206	94	Gene; sRNA;	IS128 RNA
ryfA	RF00126	10	295	75	107	298	84	Gene; sRNA;	ryfA RNA
t44	RF00127	20	105	76	344	103	69	Gene; sRNA;	t44 RNA
GlmY_tke1	RF00128	17	157	77	308	151	73	Gene; sRNA;	Glm Y RNA activator of glmS mRNA
mir-103	RF00129	28	78	85	175	78	85	Gene; miRNA;	mir-103/107 microRNA precursor
mir-192	RF00130	41	105	69	88	106	71	Gene; miRNA;	mir-192/215 microRNA precursor
mir-30	RF00131	36	70	79	170	70	81	Gene; miRNA;	mir-30 microRNA precursor
snoR24	RF00132	12	92	80	109	89	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R24
SNORD33	RF00133	75	82	63	324	82	60	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z195/SNORD33/SNORD32 family
snoZ196	RF00134	23	85	66	203	78	62	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z196/R39/R59 family
snoZ223	RF00135	5	94	86	84	89	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z223
SNORD81	RF00136	23	76	80	147	69	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD81
SNORD83	RF00137	7	76	86	200	76	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD83
SNORD16	RF00138	5	98	81	94	99	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD16
SNORA72	RF00139	29	132	82	391	122	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA72
Alpha_RBS	RF00140	39	107	65	558	91	59	Cis-reg;	Alpha operon ribosome binding site
snoZ118	RF00142	7	103	83	87	103	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z118/Z121/Z120
mir-6	RF00143	24	77	68	89	77	66	Gene; miRNA;	mir-6 microRNA precursor
mir-199	RF00144	40	99	76	163	99	81	Gene; miRNA;	mir-199 microRNA precursor
snoZ105	RF00145	11	69	63	59	69	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z105
SNORD34	RF00147	9	77	70	114	76	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD34
snoZ103	RF00149	9	98	78	783	101	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z103
SNORD42	RF00150	7	65	75	133	65	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD42
SNORD58	RF00151	34	65	80	260	65	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD58
SNORD79	RF00152	28	81	75	108	81	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD79
SNORD62	RF00153	14	85	87	111	84	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD62
SNORD63	RF00154	23	72	79	134	66	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD63
SNORA66	RF00155	25	133	82	191	121	64	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA66
SNORA70	RF00156	43	134	79	1461	127	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA70
SNORD39	RF00157	20	79	85	115	77	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD55/SNORD39
SNORD82	RF00158	27	69	81	118	68	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD82
snoZ168	RF00159	6	82	85	32	81	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z168/Z174
snoZ159	RF00160	10	89	83	103	86	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z159/U59
nos_TCE	RF00161	9	62	80	46	61	76	Cis-reg;	Nanos 3' UTR translation control element
SAM	RF00162	228	109	69	2910	110	67	Cis-reg; riboswitch;	SAM riboswitch (S box leader)
Hammerhead_1	RF00163	30	59	70	23865	45	76	Gene; ribozyme;	Hammerhead ribozyme (type I)
s2m	RF00164	38	42	82	438	42	86	Cis-reg;	Coronavirus 3' stem-loop II-like motif (s2m)
Corona_pk3	RF00165	14	62	69	431	62	81	Cis-reg;	Coronavirus 3' UTR pseudoknot
PrrB_RsmZ	RF00166	24	160	73	72	145	68	Gene; sRNA;	PrrB/RsmZ RNA family
Purine	RF00167	133	100	56	1244	100	57	Cis-reg; riboswitch;	Purine riboswitch
Lysine	RF00168	47	183	51	1126	182	51	Cis-reg; riboswitch;	Lysine riboswitch
SRP_bact	RF00169	463	100	55	3345	97	53	Gene;	Bacterial signal recognition particle RNA
msr	RF00170	10	70	59	41	70	66	Gene;	Retron msr RNA
Tombus_5	RF00171	9	161	74	51	152	70	Cis-reg;	Tombusvirus 5' UTR
CAESAR	RF00172	9	79	78	105	78	83	Cis-reg;	ctgf/hcs24 CAESAR
Hairpin	RF00173	5	51	83	20	49	76	Gene; ribozyme;	Hairpin ribozyme
Cobalamin	RF00174	431	203	54	3713	197	48	Cis-reg; riboswitch;	Cobalamin riboswitch
HIV-1_DIS	RF00175	70	40	88	2394	39	93	Cis-reg;	Human immunodeficiency virus type 1 dimerisation initiation site
Tombus_3_IV	RF00176	18	91	94	79	65	96	Cis-reg;	Tombusvirus 3' UTR region IV
SSU_rRNA_5	RF00177	341	489	50	762089	488	65	Gene; rRNA;	Small subunit ribosomal RNA, 5' domain
mir-24	RF00178	17	68	82	133	67	84	Gene; miRNA;	mir-24 microRNA precursor family
GAIT	RF00179	8	70	98	51	71	89	Cis-reg;	GAIT element
REN-SRE	RF00180	13	36	89	103	36	80	Cis-reg;	Renin stability regulatory element (REN-SRE)
SNORD113	RF00181	59	74	67	1741	75	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD113/SNORD114 family
Corona_package	RF00182	15	129	84	79	128	82	Cis-reg;	Coronavirus packaging signal
G-CSF_SLDE	RF00183	16	93	81	58	93	83	Cis-reg;	G-CSF factor stem-loop destabilising element (SLDE)
PVX_3	RF00184	4	54	98	28	51	95	Cis-reg;	Potato virus X cis-acting regulatory element
Flavi_CRE	RF00185	84	94	66	788	92	74	Cis-reg;	Flavivirus 3' UTR cis-acting replication element (CRE)
SNORD101	RF00186	26	73	85	78	72	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD101
SNORD102	RF00187	11	71	89	47	72	88	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD102
SNORD103	RF00188	41	80	81	162	79	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD103/SNORD85
SNORD95	RF00189	5	67	95	116	62	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD95
SNORA16	RF00190	29	135	75	220	129	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA16B/SNORA16A family
SNORA57	RF00191	26	146	81	226	139	66	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA57
BLV_package	RF00192	5	55	100	7	50	95	Cis-reg;	Bovine leukaemia virus RNA packaging signal
CTV_rep_sig	RF00193	9	273	98	37	263	98	Cis-reg;	Citrus tristeza virus replication signal
Rubella_3	RF00194	25	66	97	156	51	98	Cis-reg;	Rubella virus 3' cis-acting element
RsmY	RF00195	11	121	78	44	119	73	Gene; sRNA;	RsmY RNA family
AMV_RNA1_SL	RF00196	6	35	100	12	35	82	Cis-reg;	Alfalfa mosaic virus RNA 1 5' UTR stem-loop
SL1	RF00198	32	103	84	1431	96	71	Gene;	SL1 RNA
SL2	RF00199	32	110	78	233	108	73	Gene;	SL2 RNA
snoZ199	RF00200	17	82	82	72	80	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z199
snoZ278	RF00201	7	114	95	89	114	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z278
snoR66	RF00202	6	74	87	74	73	86	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R66
snoR160	RF00203	9	79	72	67	72	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R160
snoR12	RF00204	9	83	79	111	78	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R12
snoR41	RF00205	7	94	89	35	93	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R41
U54	RF00206	22	81	70	85	79	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U54
K10_TLS	RF00207	5	44	100	12	44	100	Cis-reg;	K10 transport/localisation element (TLS)
snoR72	RF00208	5	87	97	19	80	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R72
IRES_Pesti	RF00209	25	275	89	1551	239	79	Cis-reg; IRES;	Pestivirus internal ribosome entry site (IRES)
IRES_Aptho	RF00210	92	461	84	417	419	65	Cis-reg; IRES;	Aphthovirus internal ribosome entry site (IRES)
SNORD35	RF00211	8	88	73	160	86	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD35
SNORD38	RF00212	7	68	81	173	69	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD38
snoR38	RF00213	19	85	57	387	84	56	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R38
Retro_dr1	RF00214	26	90	90	223	77	68	Cis-reg;	Retrovirus direct repeat 1 (dr1)
Tombus_3_III	RF00215	28	69	81	72	66	81	Cis-reg;	Tombus virus defective interfering (DI) RNA region 3
IRES_c-myc	RF00216	23	302	98	148	263	81	Cis-reg; IRES;	c-myc internal ribosome entry site (IRES)
SNORD20	RF00217	13	79	89	72	75	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD20
SNORD46	RF00218	9	89	69	151	92	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD46
Rhino_CRE	RF00220	12	86	85	95	86	74	Cis-reg;	Human rhinovirus internal cis-acting regulatory element (CRE)
SNORD43	RF00221	7	76	65	117	71	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD43
IRES_Bag1	RF00222	14	368	80	61	318	76	Cis-reg; IRES;	Bag-1 internal ribosome entry site (IRES)
IRES_Bip	RF00223	9	252	82	88	233	66	Cis-reg; IRES;	bip internal ribosome entry site (IRES)
IRES_FGF2	RF00224	6	493	90	22	445	84	Cis-reg; IRES;	FGF-2 internal ribosome entry site (IRES)
IRES_Tobamo	RF00225	7	151	87	23	148	86	Cis-reg; IRES;	Tobamovirus internal ribosome entry site (IRES)
IRES_n-myc	RF00226	6	323	74	91	267	52	Cis-reg; IRES;	n-myc internal ribosome entry site (IRES)
FIE3	RF00227	5	67	62	25	66	75	Cis-reg;	FIE3 (ftz instability element 3') element
IRES_HepA	RF00228	23	571	97	425	271	74	Cis-reg; IRES;	Hepatitis A virus internal ribosome entry site (IRES)
IRES_Picorna	RF00229	92	251	84	2893	171	80	Cis-reg; IRES;	Picornavirus internal ribosome entry site (IRES)
T-box	RF00230	63	225	48	8260	215	49	Cis-reg;	T-box leader
SCARNA13	RF00231	24	274	80	82	265	69	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 13
Spi-1	RF00232	5	164	92	41	162	87	Cis-reg;	Spi-1 (PU.1) 5' UTR regulatory element
Tymo_tRNA-like	RF00233	28	82	72	95	78	65	Cis-reg;	Tymovirus/Pomovirus tRNA-like 3' UTR element
glmS	RF00234	17	182	59	411	170	58	Cis-reg; riboswitch;	glmS glucosamine-6-phosphate activated ribozyme
Plasmid_RNAIII	RF00235	7	129	93	13	130	96	Gene;	Plasmid RNAIII
ctRNA_pGA1	RF00236	15	77	73	34	78	71	Gene; antisense;	ctRNA
mir-9	RF00237	43	61	79	277	61	82	Gene; miRNA;	mir-9/mir-79 microRNA precursor family
ctRNA_pND324	RF00238	48	85	69	84	84	67	Gene; antisense;	ctRNA
mir-124	RF00239	49	80	74	216	80	79	Gene; miRNA;	mir-124 microRNA precursor family
RNA-OUT	RF00240	16	70	87	582	69	95	Gene; antisense;	RNA-OUT
mir-8	RF00241	9	77	66	204	77	67	Gene; miRNA;	mir-8/mir-141/mir-200 microRNA precursor family
ctRNA_pT181	RF00242	16	96	77	50	90	75	Gene; antisense;	ctRNA
traJ_5	RF00243	6	108	88	61	107	89	Cis-reg;	traJ 5' UTR
mir-26	RF00244	5	72	75	162	73	76	Gene; miRNA;	mir-26 microRNA precursor family
mir-19	RF00245	36	76	80	216	74	79	Gene; miRNA;	mir-19 microRNA precursor family
mir-135	RF00246	30	90	70	182	90	70	Gene; miRNA;	mir-135 microRNA precursor family
mir-160	RF00247	7	94	68	163	89	66	Gene; miRNA;	mir-160 microRNA precursor family
mir-148	RF00248	5	86	77	151	85	76	Gene; miRNA;	mir-148/mir-152 microRNA precursor family
mir-46	RF00249	7	73	83	14	74	73	Gene; miRNA;	mir-46/mir-47/mir-281 microRNA precursor family
mir-TAR	RF00250	45	60	85	4071	60	93	Gene; miRNA;	Trans-activation response element (TAR)
mir-219	RF00251	10	71	80	164	72	72	Gene; miRNA;	mir-219 microRNA precursor family
Alfamo_CPB	RF00252	18	182	89	36	133	80	Cis-reg;	Alfalfa mosaic virus coat protein binding (CPB) RNA
mir-101	RF00253	24	75	84	118	75	86	Gene; miRNA;	mir-101 microRNA precursor family
mir-16	RF00254	12	80	74	184	79	73	Gene; miRNA;	mir-16 microRNA precursor family
mir-218	RF00255	14	97	77	122	95	78	Gene; miRNA;	mir-218 microRNA precursor family
mir-196	RF00256	14	90	71	216	90	71	Gene; miRNA;	mir-196 microRNA precursor family
mir-194	RF00257	29	84	71	100	85	74	Gene; miRNA;	mir-194 microRNA precursor family
mir-130	RF00258	8	83	87	83	81	74	Gene; miRNA;	mir-130 microRNA precursor family
IFN_gamma	RF00259	5	168	91	129	93	78	Cis-reg;	Interferon gamma 5' UTR regulatory element
HepC_CRE	RF00260	52	51	89	1366	50	91	Cis-reg;	Hepatitis C virus (HCV) cis-acting replication element (CRE)
IRES_L-myc	RF00261	11	220	90	86	183	47	Cis-reg; IRES;	L-myc internal ribosome entry site (IRES)
sar	RF00262	6	68	81	41	67	75	Gene; antisense;	sar RNA
SNORA68	RF00263	25	132	74	313	123	56	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA68
SNORA64	RF00264	9	133	72	186	127	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA64/SNORA10 family
SNORA69	RF00265	16	132	82	88	128	70	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA69
snoZ17	RF00266	24	71	79	88	69	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z17
snoR64	RF00267	14	95	70	46	92	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R64/Z200 family
snoZ7	RF00268	5	78	95	20	74	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoZ7/snoR77
SNORD61	RF00270	35	71	71	122	71	62	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD61
SNORD60	RF00271	22	82	80	114	82	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD60
SNORA67	RF00272	10	141	82	233	133	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA67
SNORD59	RF00273	24	73	76	176	72	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD59
SNORD57	RF00274	23	71	79	90	68	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD57
SNORD56	RF00275	7	70	81	181	69	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD56
SNORD52	RF00276	20	67	83	105	65	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD52
SNORD49	RF00277	26	71	80	126	70	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD49
SNORD50	RF00278	24	71	84	151	70	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD50
SNORD45	RF00279	11	74	77	235	77	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD45
SNORD51	RF00280	13	77	86	79	76	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD51
SNORD47	RF00281	19	75	83	91	75	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD47
SNORD48	RF00282	7	62	92	70	62	90	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD48
SCARNA18	RF00283	20	81	87	123	81	78	Gene; snRNA; snoRNA; scaRNA;	small Cajal body-specific RNA 18
SNORD74	RF00284	22	79	78	170	76	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD74
snoZ6	RF00285	7	91	92	91	72	62	Gene; snRNA; snoRNA; CD-box;	Z6 small nucleolar RNA
SCARNA8	RF00286	22	130	81	104	127	73	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 8
SNORD44	RF00287	12	61	83	75	60	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD44
snoZ30	RF00288	20	97	84	73	96	81	Gene; snRNA; snoRNA; CD-box;	Z30 small nucleolar RNA
SNORND104	RF00289	18	69	88	61	69	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD104
BaMV_CRE	RF00290	5	140	100	14	140	100	Cis-reg;	Bamboo mosaic potexvirus (BaMV) cis-regulatory element
snoR639	RF00291	9	139	82	26	139	87	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR639/H1
snoTBR5	RF00292	6	89	85	52	84	90	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA TBR5
snoM1	RF00293	7	99	90	17	98	89	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoM1
snoTBR17	RF00294	5	284	86	53	248	84	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA TBR17
snoTBR7	RF00295	6	75	86	56	72	87	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA TBR7
snoR16	RF00296	22	85	76	51	81	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R16
snoZ221_snoR21b	RF00300	12	99	77	40	92	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z221/R21b
snoZ256	RF00301	5	93	87	20	94	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z256
SNORA65	RF00302	8	125	85	152	123	70	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA65
snoR86	RF00303	11	124	78	47	124	75	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR86
snoZ279_R105_R108	RF00304	20	106	76	40	107	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z279/snoR105/snoR108
snoZ248	RF00305	6	137	98	24	121	91	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z248
snoZ178	RF00306	6	152	100	85	125	44	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z178
snoR98	RF00307	4	108	84	19	101	55	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR98
snosnR60_Z15	RF00309	23	93	63	276	89	60	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR60/Z15/Z230/Z193/J17
snoZ165	RF00310	5	90	95	13	88	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z165
snoZ188	RF00311	24	118	81	32	114	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z188
snoZ206	RF00312	6	130	90	30	116	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z206
snoZ173	RF00313	5	106	99	12	88	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z173
snoZ182	RF00314	7	89	94	12	88	95	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z182
snoJ33	RF00315	5	79	79	40	78	72	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA J33
snoR43	RF00316	16	72	85	28	71	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R43
snoZ163	RF00317	7	89	82	30	85	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z163/Z177 family
snoZ175	RF00318	6	75	100	9	73	100	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z175
SNORA23	RF00319	5	182	91	100	172	71	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA23
snoZ185	RF00320	5	84	95	18	78	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z185
snoZ247	RF00321	8	136	81	464	136	54	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z247
SNORA31	RF00322	5	125	84	860	122	59	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA31
snoR79	RF00323	5	64	100	21	56	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R79
snoMBII-202	RF00324	26	82	71	105	80	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA MBII-202
SNORD53_SNORD92	RF00325	37	79	75	190	80	72	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD53/SNORD92
snoZ155	RF00326	8	77	79	30	77	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z155
snoZ194	RF00327	5	106	98	15	103	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z194
snoZ161_228	RF00328	11	90	67	51	92	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z161/Z228
snoZ162	RF00329	5	88	92	18	90	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z162
snoZ43	RF00330	7	99	84	53	96	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z43
snoZ169	RF00331	3	69	87	12	67	88	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z169
snoZ266	RF00332	11	91	73	61	90	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z266
snoZ157	RF00333	10	97	75	90	96	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z157/R69/R10
SNORA3	RF00334	6	128	76	351	125	62	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA3/SNORA45 family
snoZ13_snr52	RF00335	35	99	71	109	97	61	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z13/snr52
snoJ26	RF00336	5	149	94	33	145	90	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA J26
snoZ112	RF00337	6	183	94	69	174	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z112
snoR53	RF00338	5	91	93	19	89	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR53
snoR60	RF00339	10	73	86	58	72	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR60
SNORA36	RF00340	6	128	84	326	122	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA36 family
snoZ39	RF00341	5	61	87	72	62	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z39
snoZ40	RF00342	5	72	94	84	70	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z40
snoZ122	RF00343	9	85	71	92	89	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z122
snoZ267	RF00344	5	72	82	29	71	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z267
snoR1	RF00345	13	93	73	61	89	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR1
snoR9_plant	RF00348	7	129	85	53	114	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR9
snoR11	RF00349	5	91	86	45	90	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R11/Z151
snoZ152	RF00350	9	106	73	37	103	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z152/R70/R12/
snoR20	RF00351	4	93	85	7	93	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R20
snoR21	RF00352	6	82	79	24	77	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R21
snoR31_Z110_Z27	RF00353	8	94	67	68	95	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR31/Z110/Z27
snoR28	RF00355	9	76	83	30	74	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR28
snoR32_R81	RF00356	6	95	81	16	93	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R32/R81/Z41
snoR44_J54	RF00357	29	94	74	93	96	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA R44/J54/Z268 family
snoZ101	RF00358	14	94	79	49	93	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z101
snoZ102_R77	RF00359	9	86	87	44	86	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z102/R77
snoZ107_R87	RF00360	9	114	74	78	106	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z107/R87
snoZ119	RF00361	6	96	95	18	97	94	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z119
Pospi_RY	RF00362	16	79	95	237	78	93	Cis-reg;	Pospiviroid RY motif stem loop
mir-BART1	RF00363	5	70	95	18	70	98	Gene; miRNA;	mir-BART1 microRNA precursor family
mir-BART2	RF00364	8	61	96	18	59	96	Gene; miRNA;	mir-BART2 microRNA precursor family
mir-BHRF1-1	RF00365	5	66	98	10	66	99	Gene; miRNA;	mir-BHRF1-1 microRNA precursor family
mir-BHRF1-2	RF00366	5	65	85	13	65	93	Gene; miRNA;	mir-BHRF1-2 microRNA precursor family
mir-BHRF1-3	RF00367	5	65	100	10	65	100	Gene; miRNA;	mir-BHRF1-3 microRNA precursor family
sroB	RF00368	11	78	76	151	80	82	Gene; sRNA;	sroB RNA
sroC	RF00369	6	160	77	138	159	78	Gene; sRNA;	sroC RNA
sroD	RF00370	5	86	87	124	83	91	Gene; sRNA;	sroD RNA
sroE	RF00371	4	88	83	113	89	91	Gene; sRNA;	sroE RNA
sroH	RF00372	6	157	86	45	160	96	Gene; sRNA;	sroH RNA
RNaseP_arch	RF00373	72	312	56	322	304	51	Gene; ribozyme;	Archaeal RNase P
Gammaretro_CES	RF00374	23	100	91	1308	100	76	Cis-reg;	Gammaretrovirus core encapsidation signal
HIV_PBS	RF00375	130	99	93	3082	90	83	Cis-reg;	HIV primer binding site (PBS)
HIV_GSL3	RF00376	72	83	82	17893	80	88	Cis-reg;	HIV gag stem loop 3 (GSL3)
snoU6-53	RF00377	25	107	77	111	105	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U6-53/MBII-28
Qrr	RF00378	31	106	78	204	105	79	Gene; sRNA;	Qrr RNA
ydaO-yuaA	RF00379	106	143	62	885	157	60	Cis-reg;	ydaO/yuaA leader
ykoK	RF00380	96	168	63	600	168	64	Cis-reg;	ykoK leader
Antizyme_FSE	RF00381	13	57	86	223	57	87	Cis-reg; frameshift_element;	Antizyme RNA frameshifting stimulation element
DnaX	RF00382	5	65	88	151	64	87	Cis-reg; frameshift_element;	DnaX ribosomal frameshifting element
IS1222_FSE	RF00383	5	118	94	61	115	94	Cis-reg; frameshift_element;	Insertion sequence IS1222 ribosomal frameshifting element
Pox_AX_element	RF00384	10	62	95	94	62	96	Cis-reg;	Poxvirus AX element late mRNA cis-regulatory element
IBV_D-RNA	RF00385	10	41	95	113	40	96	Cis-reg;	Infectious bronchitis virus D-RNA
Entero_5_CRE	RF00386	160	89	86	732	80	77	Cis-reg;	Enterovirus 5' cloverleaf cis-acting replication element
IRES_FGF1	RF00387	6	165	88	53	158	75	Cis-reg; IRES;	FGF-1 internal ribosome entry site (IRES)
QaRNA	RF00388	6	103	70	19	97	82	Gene; antisense;	Qa RNA
satBaMV_CRE	RF00389	42	158	95	74	157	95	Cis-reg;	Bamboo mosaic virus satellite RNA cis-regulatory element
UPSK	RF00390	6	23	95	28	23	96	Cis-reg;	UPSK RNA
RtT	RF00391	58	129	71	1240	127	57	Cis-reg;	RtT RNA
SNORA5	RF00392	6	134	77	285	127	66	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA5
SNORA8	RF00393	5	139	89	190	132	76	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA8
SNORA4	RF00394	7	140	75	171	134	67	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA4
SNORA13	RF00396	48	133	68	160	128	59	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA13
SNORA14	RF00397	16	134	79	105	128	72	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA14
SNORA15	RF00398	20	135	83	198	122	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA15
SNORA24	RF00399	5	129	89	182	125	75	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA24
SNORA28	RF00400	25	125	80	176	120	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA28
SNORA20	RF00401	17	129	85	182	127	73	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA20
SNORA25	RF00402	27	127	77	541	121	62	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA25
SNORA41	RF00403	29	132	79	126	127	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA41
SNORA46	RF00404	21	136	83	90	134	76	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA46
SNORA44	RF00405	25	129	83	339	124	70	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA44
SNORA42	RF00406	21	134	81	795	127	64	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA42/SNORA80 family
SNORA50	RF00407	14	135	73	153	134	65	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA50
SNORA1	RF00408	28	133	78	268	127	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA1
SNORA7	RF00409	27	139	81	25640	131	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA7
SNORA2	RF00410	18	135	74	1231	134	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA2/SNORA34 family
SNORA9	RF00411	36	132	78	303	128	72	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA9
SNORA21	RF00412	5	133	89	192	127	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA21
SNORA19	RF00413	31	127	80	371	121	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA19
SNORA22	RF00414	30	133	79	155	130	76	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA22
SNORA30	RF00415	11	129	73	195	127	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA30/SNORA37 family
SNORA43	RF00416	22	134	74	185	132	67	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA43
SNORA56	RF00417	13	129	83	63	125	70	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA56
SNORA58	RF00418	19	135	82	94	134	78	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA58
SNORA52	RF00419	20	133	72	107	125	62	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA52
SNORA61	RF00420	23	129	75	1234	120	57	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA61
SNORA32	RF00421	9	121	84	333	110	66	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA32
SCARNA24	RF00422	21	130	81	153	126	78	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 24
SCARNA4	RF00423	23	128	85	119	126	75	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 4
SCARNA16	RF00424	37	184	77	161	171	72	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 16
SNORA18	RF00425	29	131	77	416	125	65	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA18
SCARNA15	RF00426	18	128	78	170	125	64	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 15
SCARNA23	RF00427	18	125	82	68	121	73	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 23
SNORA38	RF00428	25	131	86	303	128	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA38
SNORA29	RF00429	23	138	79	214	136	64	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA29
SNORA54	RF00430	5	127	60	113	123	60	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA54
SNORA55	RF00431	25	134	86	127	128	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA55
SNORA51	RF00432	9	132	82	608	126	71	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA51
Hsp90_CRE	RF00433	6	151	95	27	141	80	Cis-reg; thermoregulator;	Hsp90 cis-regulatory element
BTE	RF00434	17	101	74	99	105	78	Cis-reg;	Luteovirus cap-independent translation element (BTE)
ROSE	RF00435	13	101	61	71	92	57	Cis-reg; thermoregulator;	Repression of heat shock gene expression (ROSE) element
UnaL2	RF00436	30	54	78	16952	53	76	Cis-reg;	UnaL2 LINE 3' element
HLE	RF00437	5	129	83	36	128	76	Cis-reg;	Hairy RNA localisation element (HLE)
SNORA33	RF00438	26	129	80	292	122	65	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA33
SNORD87	RF00439	9	82	89	60	84	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD87
SNORD37	RF00440	7	63	79	239	68	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD37
snoZ242	RF00441	5	197	89	18	187	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z242
ykkC-yxkD	RF00442	109	107	65	303	105	62	Cis-reg;	ykkC-yxkD leader
SNORA27	RF00443	22	127	84	203	120	70	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA27
PrrF	RF00444	17	148	81	56	138	77	Gene; sRNA;	PrrF RNA
mir-399	RF00445	13	113	60	134	111	53	Gene; miRNA;	mir-399 microRNA precursor family
mir-133	RF00446	46	87	67	215	87	74	Gene; miRNA;	mir-133 microRNA precursor family
IRES_Kv1_4	RF00447	6	256	88	47	252	85	Cis-reg; IRES;	Voltage-gated potassium-channel Kv1.4 IRES
IRES_EBNA	RF00448	6	211	84	14	211	76	Cis-reg; IRES;	Epstein-Barr virus nuclear antigen (EBNA) IRES
IRES_HIF1	RF00449	16	277	77	58	255	74	Cis-reg; IRES;	HIF-1 alpha IRES
mir-395	RF00451	21	102	63	571	98	63	Gene; miRNA;	mir-395 microRNA precursor family
mir-172	RF00452	11	121	58	303	125	62	Gene; miRNA;	mir-172 microRNA precursor family
Cardiovirus_CRE	RF00453	4	33	85	7	33	87	Cis-reg;	Cardiovirus cis-acting replication element (CRE)
p27_CRE	RF00454	11	58	94	34	58	93	Cis-reg;	p27 cis-regulatory element
mir-15	RF00455	14	85	71	143	85	74	Gene; miRNA;	mir-15 microRNA precursor family
mir-34	RF00456	18	87	72	156	85	66	Gene; miRNA;	mir-34 microRNA precursor family
IRES_mnt	RF00457	21	200	93	48	197	92	Cis-reg; IRES;	Mnt IRES
IRES_Cripavirus	RF00458	7	198	53	16	198	57	Cis-reg; IRES;	Cripavirus internal ribosome entry site (IRES)
MPMV_package	RF00459	9	277	72	556	273	50	Cis-reg;	Mason-Pfizer monkey virus packaging signal
U1A_PIE	RF00460	35	74	77	145	73	81	Cis-reg;	U1A polyadenylation inhibition element (PIE)
IRES_VEGF_A	RF00461	7	303	91	44	299	93	Cis-reg; IRES;	Vascular endothelial growth factor (VEGF) IRES A
IRES_APC	RF00462	6	53	90	53	41	82	Cis-reg; IRES;	APC internal ribosome entry site (IRES)
ApoB_5_CRE	RF00463	5	126	92	23	124	96	Cis-reg;	Apolipoprotein B (apoB) 5' UTR cis-regulatory element
mir-92	RF00464	43	79	76	173	78	68	Gene; miRNA;	mir-92 microRNA precursor family
JEV_hairpin	RF00465	20	59	88	393	59	87	Cis-reg;	Japanese encephalitis virus (JEV) hairpin structure
RSV_PBS	RF00467	23	75	92	163	69	70	Cis-reg;	Rous sarcoma virus (RSV) primer binding site (PBS)
HCV_SLVII	RF00468	110	65	75	2063	65	81	Cis-reg;	Hepatitis C virus stem-loop VII
HCV_SLIV	RF00469	110	36	89	1366	37	91	Cis-reg;	Hepatitis C stem-loop IV
Toga_5_CRE	RF00470	33	266	80	135	248	72	Cis-reg;	Togavirus 5' plus strand cis-regulatory element
snosnR48	RF00471	6	108	74	38	108	72	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR48
snosnR55	RF00472	6	89	75	41	89	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR55/Z10
snosnR54	RF00473	9	85	74	126	83	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR54
snosnR57	RF00474	6	90	75	36	89	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR57
snosnR69	RF00475	6	97	63	40	97	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR69
snosnR61	RF00476	56	83	68	221	80	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR61/Z1/Z11
snosnR66	RF00477	5	100	75	36	101	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR66
SCARNA6	RF00478	17	263	74	154	256	55	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 6
snosnR71	RF00479	7	92	76	68	92	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR71
HIV_FE	RF00480	145	51	81	11088	51	90	Cis-reg; frameshift_element;	HIV Ribosomal frameshift signal
HCV_X3	RF00481	22	99	97	156	99	98	Cis-reg;	Hepatitis C virus 3'X element
snoF1_F2	RF00482	8	139	88	44	139	72	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA F1/F2/snoR5a
IRES_IGF2	RF00483	9	120	95	72	117	91	Cis-reg; IRES;	Insulin-like growth factor II IRES
IRES_Cx32	RF00484	6	144	93	48	144	94	Cis-reg; IRES;	Connexin-32 internal ribosome entry site (IRES)
K_chan_RES	RF00485	85	114	70	2252	113	61	Cis-reg;	Potassium channel RNA editing signal
mir-129	RF00486	6	90	83	110	90	81	Gene; miRNA;	mir-129 microRNA precursor family
IRES_Cx43	RF00487	14	198	87	140	195	71	Cis-reg; IRES;	Connexin-43 internal ribosome entry site (IRES)
U1_yeast	RF00488	5	566	60	27	557	65	Gene; snRNA; splicing;	Yeast U1 spliceosomal RNA
ctRNA_p42d	RF00489	10	45	85	106	45	87	Gene; antisense;	ctRNA
S-element	RF00490	29	67	74	138	66	72	Cis-reg;	S-element
SVLPA	RF00491	6	53	95	125	54	99	Cis-reg;	Simian virus 40 late polyadenylation signal (SVLPA)
SCARNA17	RF00492	6	141	78	119	136	70	Gene; snRNA; snoRNA; scaRNA;	small Cajal body-specific RNA 17
snoU2-30	RF00493	21	69	88	158	70	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U2-30
snoU2_19	RF00494	28	80	80	182	78	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U2-19
IRES_Hsp70	RF00495	14	211	81	100	211	79	Cis-reg; IRES;	Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES)
Corona_SL-III	RF00496	5	42	95	36	42	98	Cis-reg;	Coronavirus SL-III cis-acting replication element (CRE)
EAV_LTH	RF00498	6	45	100	19	45	99	Cis-reg;	Equine arteritis virus leader TRS hairpin (LTH)
Parecho_CRE	RF00499	5	111	87	17	95	85	Cis-reg;	Human parechovirus 1 (HPeV1) cis regulatory element (CRE)
TCV_H5	RF00500	5	45	100	6	41	98	Cis-reg;	Turnip crinkle virus (TCV) repressor of minus strand synthesis H5
Rota_CRE	RF00501	14	67	86	109	63	87	Cis-reg;	Rotavirus cis-acting replication element (CRE)
TCV_Pr	RF00502	4	33	92	4	33	92	Cis-reg;	Turnip crinkle virus (TCV) core promoter hairpin (Pr)
RNAIII	RF00503	11	490	86	80	486	90	Gene;	RNAIII
Glycine	RF00504	44	100	55	4223	85	62	Cis-reg; riboswitch;	Glycine riboswitch
RydC	RF00505	5	64	88	96	64	91	Gene; sRNA;	RydC RNA
Thr_leader	RF00506	27	120	79	258	116	72	Cis-reg; leader;	Threonine operon leader
Corona_FSE	RF00507	23	82	66	359	82	70	Cis-reg; frameshift_element;	Coronavirus frameshifting stimulation element
snosnR64	RF00509	10	103	84	28	102	90	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR64
Tombus_IRE	RF00510	22	88	85	44	89	86	Cis-reg;	Tombusvirus internal replication element (IRE)
IRES_KSHV	RF00511	5	248	99	5	248	99	Cis-reg; IRES;	Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES)
Leu_leader	RF00512	6	146	63	170	145	74	Cis-reg; leader;	Leucine operon leader
Trp_leader	RF00513	24	100	60	240	98	65	Cis-reg; leader;	Tryptophan operon leader
His_leader	RF00514	36	128	64	303	126	70	Cis-reg; leader;	Histidine operon leader
PyrR	RF00515	56	121	45	795	105	49	Cis-reg;	PyrR binding site
ylbH	RF00516	3	118	62	119	119	87	Cis-reg;	ylbH leader
serC	RF00517	70	52	78	220	52	77	Cis-reg;	serC leader
speF	RF00518	6	327	71	86	332	70	Cis-reg;	speF leader
suhB	RF00519	99	76	53	333	75	51	Gene; sRNA;	suhB
ybhL	RF00520	8	73	80	55	75	82	Cis-reg;	ybhL leader
SAM_alpha	RF00521	40	79	71	227	78	68	Cis-reg; riboswitch;	SAM riboswitch (alpha-proteobacteria)
PreQ1	RF00522	42	45	67	415	45	69	Cis-reg; riboswitch;	PreQ1 riboswitch
Prion_pknot	RF00523	157	41	89	5282	41	91	Cis-reg;	Prion pseudoknot
R2_retro_el	RF00524	15	215	66	732	134	62	Cis-reg;	R2 RNA element
Flavivirus_DB	RF00525	111	72	74	4972	71	78	Cis-reg;	Flavivirus DB element
snoMe28S-U3344	RF00526	8	83	79	44	81	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-U3344
snoMe28S-G3255	RF00527	10	82	76	49	82	72	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Gm3255
snoMe28S-Gm1083	RF00528	11	89	87	110	89	87	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Gm1083
snoMe28S-Am2589	RF00529	16	108	69	59	107	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Am2589
snoMe28S-Cm2645	RF00530	20	75	80	108	72	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Cm2645
snoMe28S-Gm3113	RF00531	15	83	76	44	83	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Gm3113
snoMe18S-Um1356	RF00532	22	86	72	123	85	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me18S-Um1356
snoMe18S-Gm1358	RF00533	13	75	79	55	74	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me18S-Gm1358
SgrS	RF00534	9	229	48	129	224	74	Gene; antisense;	SgrS RNA
snoMe28S-Am982	RF00535	13	78	75	100	71	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Am982
snoMe28S-Cm3227	RF00536	13	81	91	62	81	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Cm3227
snoMe28S-Am2634	RF00537	18	93	71	101	90	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Am2634
snoCD11	RF00538	26	74	79	81	71	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA CD11
snoMe28S-Cm788	RF00539	5	72	90	31	72	84	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Me28S-Cm788
snopsi18S-1854	RF00540	16	155	80	54	154	80	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA psi18S-1854
snopsi28S-2876	RF00541	8	145	81	23	145	87	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA psi28S-2876
snopsi28S-1192	RF00542	15	140	82	78	136	81	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA psi28S-1192
snopsi18S-1377	RF00543	15	139	73	103	138	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA psi18S-1377
snopsi28S-3327	RF00544	14	143	80	58	139	73	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA psi28S-3327
snopsi18S-841	RF00545	24	140	69	73	137	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA psi18S-841/snoR66
snopsi28S-3316	RF00546	33	132	72	91	131	75	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA psi28S-3316
IRES_TrkB	RF00547	15	343	78	57	305	71	Cis-reg; IRES;	TrkB IRES
U11	RF00548	68	154	58	426	138	63	Gene; snRNA; splicing;	U11 spliceosomal RNA
IRES_c-sis	RF00549	10	602	95	48	550	89	Cis-reg; IRES;	c-sis internal ribosome entry site (IRES)
HepE_CRE	RF00550	46	147	85	187	147	85	Cis-reg;	Hepatitis E virus cis-reactive element
bicoid_3	RF00551	15	549	75	83	488	85	Cis-reg;	Bicoid 3'-UTR regulatory element
rncO	RF00552	18	204	84	173	192	81	Cis-reg;	rncO
SCARNA1	RF00553	30	163	72	100	148	71	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 1
SNORA48	RF00554	24	135	80	591	138	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA48
L13_leader	RF00555	26	67	66	209	67	68	Cis-reg; leader;	Ribosomal protein L13 leader
L19_leader	RF00556	16	40	58	201	41	61	Cis-reg; leader;	Ribosomal protein L19 leader
L10_leader	RF00557	106	140	47	492	137	48	Cis-reg; leader;	Ribosomal protein L10 leader
L20_leader	RF00558	43	126	53	373	126	54	Cis-reg; leader;	Ribosomal protein L20 leader
L21_leader	RF00559	38	79	57	305	80	62	Cis-reg; leader;	Ribosomal protein L21 leader
SNORA17	RF00560	53	132	81	3916	125	65	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA17
SNORA40	RF00561	28	127	84	670	118	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA40
SNORA49	RF00562	21	132	82	65	130	76	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA49
SNORA53	RF00563	28	240	79	98	216	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA53
SCARNA11	RF00564	24	138	81	160	128	64	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 11
SCARNA3	RF00565	23	137	77	89	128	74	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 3
SNORA35	RF00566	31	128	66	106	128	67	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA35
SNORD17	RF00567	19	236	78	50	235	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD17
SNORA26	RF00568	76	121	79	399	120	70	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA26
SNORD19	RF00569	22	76	85	63	72	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD19
SNORD64	RF00570	17	65	79	55	66	79	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD64
SNORD65	RF00571	24	72	83	142	72	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD65
SNORD66	RF00572	18	76	84	83	75	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD66
SNORD67	RF00573	15	111	79	77	107	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD67
SNORD69	RF00574	11	77	88	47	75	90	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD69
SNORD70	RF00575	21	87	79	131	85	72	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD70
SNORD71	RF00576	17	85	85	47	84	84	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORD71
SNORD72	RF00577	16	80	85	66	79	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD72
SNORD89	RF00578	18	113	89	72	110	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD89
SNORD90	RF00579	18	110	86	51	108	87	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD90
SNORD91	RF00580	24	93	80	95	93	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD91 family
SNORD12	RF00581	8	88	70	189	89	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar SNORD12/SNORD106
SCARNA14	RF00582	22	135	77	100	129	74	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 14
SNORD105	RF00584	15	85	84	44	84	83	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD105
SNORA12	RF00586	22	147	79	106	143	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA12
SNORD41	RF00588	20	70	77	67	70	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD41
SNORD77	RF00591	21	67	81	222	68	65	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD77
SNORD78	RF00592	18	65	84	108	63	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD78
snoU83B	RF00593	21	93	83	125	89	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U83B
SNORD86	RF00594	6	85	79	96	83	72	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD86
SNORA76	RF00598	22	131	87	243	125	58	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA76
SNORA77	RF00599	19	124	77	138	123	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA77
SNORA79	RF00600	25	144	78	148	142	70	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA79
SCARNA20	RF00601	5	130	82	189	126	66	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 20
SCARNA21	RF00602	24	139	78	109	139	72	Gene; snRNA; snoRNA; scaRNA;	Small Cajal body specific RNA 21
SNORD23	RF00603	15	108	87	69	107	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD23
SNORD88	RF00604	35	91	79	193	89	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD88
SNORD93	RF00606	15	72	91	67	74	87	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD93
SNORD98	RF00607	9	65	80	61	62	86	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD98
SNORD99	RF00608	23	73	80	57	72	82	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD99
SNORD100	RF00609	25	80	77	88	77	73	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD100
SNORD110	RF00610	16	69	86	59	71	71	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD110
SNORD111	RF00611	5	81	72	131	82	67	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD111
SNORD75	RF00612	5	65	78	100	62	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD75
SNORD94	RF00613	18	137	81	71	131	73	Gene; snRNA; snoRNA; CD-box;	Small Nucleolar RNA SNORD94
SNORA11	RF00614	35	128	84	524	124	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA11
LhrA	RF00615	10	268	99	27	265	97	Gene; sRNA;	Listeria Hfq binding LhrA
LhrC	RF00616	12	112	90	77	106	89	Gene; sRNA;	Listeria Hfq binding LhrC
cHP	RF00617	59	45	72	2787	45	81	Cis-reg;	flavivirus capsid hairpin cHP
U4atac	RF00618	59	135	59	419	122	66	Gene; snRNA; splicing;	U4atac minor spliceosomal RNA
U6atac	RF00619	61	121	71	1625	117	65	Gene; snRNA; splicing;	U6atac minor spliceosomal RNA
HCV_ARF_SL	RF00620	36	153	90	5837	149	93	Cis-reg;	Hepatitis C alternative reading frame stem-loop
CoTC_ribozyme	RF00621	10	187	88	38	186	75	Gene; ribozyme;	Beta-globin co-transcriptional cleavage ribozyme
CPEB3_ribozyme	RF00622	11	76	85	102	74	78	Gene; ribozyme;	Mammalian CPEB3 ribozyme
P1	RF00623	11	180	69	32	173	60	Gene;	Pseudomonas sRNA P1
P9	RF00624	12	75	79	67	80	78	Gene;	Pseudomonas sRNA P9
P11	RF00625	10	136	74	23	137	72	Gene;	Pseudomonas sRNA P11
Gurken	RF00626	3	69	99	4	71	85	Cis-reg;	Gurken localisation signal
P15	RF00627	14	120	81	31	119	79	Gene;	Pseudomonas sRNA P15
P16	RF00628	15	194	73	29	193	72	Gene;	Pseudomonas sRNA P16
P24	RF00629	13	254	72	31	236	71	Gene;	Pseudomonas sRNA P24
P26	RF00630	27	63	73	237	61	79	Gene;	Pseudomonas sRNA P26
sxy	RF00632	2	104	97	16	104	98	Cis-reg;	sxy 5' UTR element
SAM-IV	RF00634	40	115	73	267	115	70	Cis-reg; riboswitch;	S-adenosyl methionine (SAM) riboswitch,
HAR1F	RF00635	17	131	93	48	126	89	Gene;	Human accelerated region 1F
NRON	RF00636	24	368	91	46	364	91	Gene;	ncRNA Repressor of NFAT (nuclear factor of activated T cells)
mir-276	RF00637	16	93	74	60	93	79	Gene; miRNA;	microRNA mir-276
MIR159	RF00638	67	195	53	368	199	51	Gene; miRNA;	microRNA MIR159
mir-515	RF00639	41	87	79	697	86	80	Gene; miRNA;	microRNA mir-515
MIR167_1	RF00640	19	158	53	297	160	54	Gene; miRNA;	microRNA MIR167_1
mir-154	RF00641	107	79	57	1459	79	58	Gene; miRNA;	microRNA mir-154
mir-23	RF00642	24	75	70	135	74	76	Gene; miRNA;	microRNA mir-23
MIR171_1	RF00643	45	106	56	274	105	60	Gene; miRNA;	microRNA MIR171_1
mir-27	RF00644	32	82	68	132	82	74	Gene; miRNA;	microRNA mir-27
MIR169_2	RF00645	87	128	52	317	127	48	Gene; miRNA;	microRNA MIR169_2
mir-204	RF00646	31	101	71	129	102	76	Gene; miRNA;	microRNA mir-204
MIR164	RF00647	31	115	62	206	132	63	Gene; miRNA;	microRNA MIR164
MIR396	RF00648	26	136	53	158	137	57	Gene; miRNA;	microRNA MIR396
mir-128	RF00649	15	83	76	115	83	86	Gene; miRNA;	microRNA mir-128
mir-153	RF00650	18	86	77	105	86	85	Gene; miRNA;	microRNA mir-153
mir-221	RF00651	44	69	73	135	69	76	Gene; miRNA;	microRNA mir-221
MIR478	RF00652	17	76	88	394	86	83	Gene; miRNA;	microRNA MIR478
mir-22	RF00653	13	87	75	80	85	86	Gene; miRNA;	microRNA mir-22
mir-216	RF00654	36	88	61	118	88	66	Gene; miRNA;	microRNA mir-216
mir-28	RF00655	25	85	79	605	89	63	Gene; miRNA;	microRNA mir-28
mir-205	RF00656	26	101	72	72	101	77	Gene; miRNA;	microRNA mir-205
mir-184	RF00657	33	83	70	106	83	71	Gene; miRNA;	microRNA mir-184
mir-21	RF00658	10	72	77	68	72	91	Gene; miRNA;	microRNA mir-21
mir-365	RF00659	9	89	80	106	92	87	Gene; miRNA;	microRNA mir-365
mir-214	RF00660	8	107	77	65	108	89	Gene; miRNA;	microRNA mir-214
mir-31	RF00661	38	85	59	176	86	59	Gene; miRNA;	microRNA mir-31
mir-132	RF00662	20	89	65	91	87	69	Gene; miRNA;	microRNA mir-132
mir-183	RF00663	13	98	76	74	100	85	Gene; miRNA;	microRNA mir-183
mir-223	RF00664	15	109	74	59	110	85	Gene; miRNA;	microRNA mir-223
mir-290	RF00665	27	81	67	205	81	65	Gene; miRNA;	microRNA mir-290
mir-32	RF00666	7	70	89	53	69	96	Gene; miRNA;	microRNA mir-32
mir-33	RF00667	45	68	69	130	68	71	Gene; miRNA;	microRNA mir-33
mir-302	RF00668	47	68	72	192	67	75	Gene; miRNA;	microRNA mir-302
mir-96	RF00669	27	78	90	68	78	91	Gene; miRNA;	microRNA mir-96
mir-105	RF00670	20	80	67	206	80	66	Gene; miRNA;	microRNA mir-105
mir-138	RF00671	25	78	78	106	79	75	Gene; miRNA;	microRNA mir-138
mir-190	RF00672	28	87	65	149	86	75	Gene; miRNA;	microRNA mir-190
mir-217	RF00673	25	105	78	61	105	81	Gene; miRNA;	microRNA mir-217
mir-187	RF00674	19	102	78	49	103	84	Gene; miRNA;	microRNA mir-187
mir-145	RF00675	10	88	78	60	87	85	Gene; miRNA;	microRNA mir-145
mir-127	RF00676	2	98	97	52	97	99	Gene; miRNA;	microRNA mir-127
MIR168	RF00677	10	129	62	113	130	74	Gene; miRNA;	microRNA MIR168
mir-140	RF00678	10	98	86	54	98	94	Gene; miRNA;	microRNA mir-140
mir-210	RF00679	26	95	64	77	95	67	Gene; miRNA;	microRNA mir-210
mir-224	RF00680	5	80	87	53	81	96	Gene; miRNA;	microRNA mir-224
mir-198	RF00681	3	62	88	28	61	94	Gene; miRNA;	microRNA mir-198
mir-144	RF00682	15	85	84	59	85	90	Gene; miRNA;	microRNA mir-144
mir-143	RF00683	17	105	78	56	105	85	Gene; miRNA;	microRNA mir-143
mir-122	RF00684	29	74	94	58	74	95	Gene; miRNA;	mir-122 microRNA precursor
mir-36	RF00685	38	99	55	131	100	54	Gene; miRNA;	microRNA mir-36
mir-338	RF00686	21	81	73	60	80	73	Gene; miRNA;	microRNA mir-338
mir-136	RF00687	2	82	95	44	82	99	Gene; miRNA;	microRNA mir-136
MIR394	RF00688	13	111	66	75	115	73	Gene; miRNA;	microRNA MIR394
MIR390	RF00689	12	120	71	70	104	86	Gene; miRNA;	microRNA MIR390
MIR408	RF00690	6	131	71	24	154	68	Gene; miRNA;	microRNA MIR408
mir-146	RF00691	33	90	64	98	89	69	Gene; miRNA;	microRNA mir-146
MIR171_2	RF00692	7	109	71	25	106	69	Gene; miRNA;	microRNA MIR171_2
mir-147	RF00693	70	69	67	230	69	72	Gene; miRNA;	microRNA mir-147
mir-137	RF00694	28	100	62	106	100	68	Gene; miRNA;	microRNA mir-137
MIR398	RF00695	14	106	58	124	109	61	Gene; miRNA;	microRNA MIR398
mir-203	RF00696	10	79	80	50	79	73	Gene; miRNA;	microRNA mir-203
mir-186	RF00697	19	90	72	208	90	66	Gene; miRNA;	microRNA mir-186
mir-489	RF00698	19	92	79	54	91	83	Gene; miRNA;	microRNA mir-489
mir-134	RF00699	5	72	89	41	72	95	Gene; miRNA;	microRNA mir-134
mir-375	RF00700	9	68	83	52	68	92	Gene; miRNA;	microRNA mir-375
mir-126	RF00701	10	73	85	53	73	89	Gene; miRNA;	microRNA mir-126
mir-182	RF00702	15	85	85	54	84	89	Gene; miRNA;	microRNA mir-182
mir-139	RF00703	5	68	81	46	68	91	Gene; miRNA;	microRNA mir-139
MIR397	RF00704	7	113	62	31	111	59	Gene; miRNA;	microRNA MIR397
mir-202	RF00705	13	87	81	41	87	84	Gene; miRNA;	microRNA mir-202
mir-263	RF00706	23	91	59	69	90	62	Gene; miRNA;	microRNA mir-263
mir-197	RF00707	2	72	89	39	74	94	Gene; miRNA;	microRNA mir-197
mir-450	RF00708	21	91	74	120	91	79	Gene; miRNA;	microRNA mir-450
mir-455	RF00709	4	85	93	53	85	97	Gene; miRNA;	microRNA mir-455
mir-44	RF00710	6	93	75	14	93	72	Gene; miRNA;	microRNA mir-44
mir-449	RF00711	57	91	58	177	91	58	Gene; miRNA;	microRNA mir-449
mir-460	RF00712	8	76	78	19	75	74	Gene; miRNA;	microRNA mir-460
mir-239	RF00713	9	101	58	14	102	55	Gene; miRNA;	microRNA mir-239
MIR535	RF00714	5	98	71	38	101	79	Gene; miRNA;	microRNA MIR535
mir-383	RF00715	5	73	92	45	73	96	Gene; miRNA;	microRNA mir-383
mir-3	RF00716	11	72	69	48	70	70	Gene; miRNA;	microRNA mir-3
mir-315	RF00717	16	82	75	31	82	71	Gene; miRNA;	microRNA mir-315
mir-431	RF00718	6	113	89	42	113	95	Gene; miRNA;	microRNA mir-431
mir-326	RF00719	6	94	92	36	94	93	Gene; miRNA;	microRNA mir-326
mir-317	RF00720	13	90	72	37	91	74	Gene; miRNA;	microRNA mir-317
MIR475	RF00721	4	115	88	36	118	72	Gene; miRNA;	microRNA MIR475
mir-451	RF00722	17	72	77	55	72	84	Gene; miRNA;	microRNA mir-451
mir-448	RF00723	17	111	75	88	110	70	Gene; miRNA;	microRNA mir-448
mir-282	RF00724	14	94	65	34	94	73	Gene; miRNA;	microRNA mir-282
mir-iab-4	RF00725	7	84	85	35	84	87	Gene; miRNA;	microRNA mir-iab-4
mir-87	RF00726	11	98	67	42	96	59	Gene; miRNA;	microRNA mir-87
bantam	RF00727	10	91	68	43	91	74	Gene; miRNA;	microRNA bantam
mir-81	RF00728	9	100	65	23	97	61	Gene; miRNA;	microRNA mir-81
mir-278	RF00729	11	99	74	32	98	78	Gene; miRNA;	microRNA mir-278
mir-277	RF00730	11	104	68	34	101	74	Gene; miRNA;	microRNA mir-277
mir-155	RF00731	17	64	76	66	65	85	Gene; miRNA;	microRNA mir-155
mir-305	RF00732	13	87	74	30	88	78	Gene; miRNA;	microRNA mir-305
mir-296	RF00733	12	78	84	36	79	89	Gene; miRNA;	microRNA mir-296
mir-52	RF00734	5	98	84	7	98	85	Gene; miRNA;	microRNA mir-52
mir-367	RF00735	13	67	88	49	67	92	Gene; miRNA;	microRNA mir-367
mir-320	RF00736	57	81	69	307	81	68	Gene; miRNA;	microRNA mir-320
mir-322	RF00737	10	83	89	34	83	90	Gene; miRNA;	microRNA mir-322
MIR476	RF00739	2	93	89	8	92	78	Gene; miRNA;	microRNA MIR476
mir-370	RF00740	6	77	90	36	78	91	Gene; miRNA;	microRNA mir-370
mir-378	RF00741	8	65	99	35	66	97	Gene; miRNA;	microRNA mir-378
MIR162_2	RF00742	10	93	78	71	98	78	Gene; miRNA;	microRNA MIR162_2
mir-308	RF00743	11	63	87	25	63	88	Gene; miRNA;	microRNA mir-308
mir-361	RF00744	4	70	93	40	71	96	Gene; miRNA;	microRNA mir-361
mir-499	RF00745	18	89	79	54	89	86	Gene; miRNA;	microRNA mir-499
mir-454	RF00746	16	115	62	46	113	74	Gene; miRNA;	microRNA mir-454
mir-283	RF00747	13	93	59	29	95	70	Gene; miRNA;	microRNA mir-283
mir-433	RF00748	4	93	94	43	93	97	Gene; miRNA;	microRNA mir-433
mir-208	RF00749	16	78	71	99	79	75	Gene; miRNA;	microRNA mir-208
mir-458	RF00750	7	77	80	11	77	81	Gene; miRNA;	microRNA mir-458
mir-12	RF00751	8	71	74	23	73	85	Gene; miRNA;	microRNA mir-12
mir-14	RF00752	6	65	79	30	63	90	Gene; miRNA;	microRNA mir-14
mir-503	RF00753	13	70	89	33	70	90	Gene; miRNA;	microRNA mir-503
mir-279	RF00754	11	91	64	37	90	71	Gene; miRNA;	microRNA mir-279
mir-542	RF00755	3	84	88	34	85	96	Gene; miRNA;	microRNA mir-542
mir-299	RF00756	6	63	88	43	62	90	Gene; miRNA;	microRNA mir-299
mir-275	RF00757	14	92	69	32	91	72	Gene; miRNA;	microRNA mir-275
mir-346	RF00758	3	94	73	42	96	91	Gene; miRNA;	microRNA mir-346
mir-342	RF00760	10	98	88	37	98	89	Gene; miRNA;	microRNA mir-342
mir-340	RF00761	44	94	58	665	95	53	Gene; miRNA;	microRNA mir-340
mir-412	RF00762	11	90	88	36	90	92	Gene; miRNA;	microRNA mir-412
mir-339	RF00763	16	95	78	39	94	81	Gene; miRNA;	microRNA mir-339
mir-191	RF00764	4	91	89	39	90	96	Gene; miRNA;	microRNA mir-191
mir-337	RF00765	6	96	85	29	95	91	Gene; miRNA;	microRNA mir-337
mir-335	RF00766	8	94	93	39	94	95	Gene; miRNA;	microRNA mir-335
mir-150	RF00767	15	84	83	46	85	80	Gene; miRNA;	microRNA mir-150
MIR405	RF00768	13	122	77	70	120	91	Gene; miRNA;	microRNA MIR405
mir-331	RF00769	3	94	94	39	94	97	Gene; miRNA;	microRNA mir-331
mir-330	RF00770	6	97	91	34	97	96	Gene; miRNA;	microRNA mir-330
mir-185	RF00771	4	80	93	44	80	97	Gene; miRNA;	microRNA mir-185
mir-328	RF00772	13	83	82	40	83	87	Gene; miRNA;	microRNA mir-328
mir-298	RF00773	4	86	72	21	86	83	Gene; miRNA;	microRNA mir-298
mir-360	RF00774	4	112	69	5	110	67	Gene; miRNA;	microRNA mir-360
mir-432	RF00775	6	92	75	81	85	79	Gene; miRNA;	microRNA mir-432
mir-540	RF00776	3	82	78	13	77	73	Gene; miRNA;	microRNA mir-540
mir-541	RF00777	9	90	82	35	89	87	Gene; miRNA;	microRNA mir-541
MIR473	RF00778	6	91	59	20	96	54	Gene; miRNA;	microRNA MIR473
MIR474	RF00779	11	101	56	608	88	48	Gene; miRNA;	microRNA MIR474
MIR477	RF00780	3	90	68	30	96	71	Gene; miRNA;	microRNA MIR477
mir-505	RF00781	3	84	93	37	83	97	Gene; miRNA;	microRNA mir-505
MIR480	RF00782	69	138	68	732	125	52	Gene; miRNA;	microRNA MIR480
mir-484	RF00783	14	66	85	40	66	89	Gene; miRNA;	microRNA mir-484
mir-486	RF00784	11	67	88	30	68	92	Gene; miRNA;	microRNA mir-486
mir-90	RF00785	5	96	76	6	96	74	Gene; miRNA;	microRNA mir-90
mir-289	RF00786	3	90	84	17	93	89	Gene; miRNA;	microRNA mir-289
mir-288	RF00787	7	97	91	20	97	94	Gene; miRNA;	microRNA mir-288
mir-287	RF00788	9	90	81	24	84	78	Gene; miRNA;	microRNA mir-287
mir-286	RF00789	14	96	68	33	96	74	Gene; miRNA;	microRNA mir-286
mir-358	RF00790	3	112	70	4	112	76	Gene; miRNA;	microRNA mir-358
mir-357	RF00791	5	106	69	7	107	70	Gene; miRNA;	microRNA mir-357
mir-490	RF00792	16	128	83	49	126	89	Gene; miRNA;	microRNA mir-490
mir-497	RF00793	6	112	88	42	112	95	Gene; miRNA;	microRNA mir-497
mir-42	RF00794	4	99	81	6	98	78	Gene; miRNA;	microRNA mir-42
mir-43	RF00795	4	102	75	6	102	72	Gene; miRNA;	microRNA mir-43
mir-48	RF00796	4	107	70	6	104	74	Gene; miRNA;	microRNA mir-48
mir-355	RF00797	4	116	71	5	116	68	Gene; miRNA;	microRNA mir-355
mir-49	RF00798	4	97	76	5	97	73	Gene; miRNA;	microRNA mir-49
mir-354	RF00799	4	112	92	5	110	88	Gene; miRNA;	microRNA mir-354
mir-353	RF00800	4	114	77	9	114	78	Gene; miRNA;	microRNA mir-353
mir-280	RF00801	8	94	84	19	94	89	Gene; miRNA;	microRNA mir-280
mir-207	RF00802	7	78	85	30	78	82	Gene; miRNA;	microRNA mir-207
mir-425	RF00803	5	84	72	43	85	92	Gene; miRNA;	microRNA mir-425
mir-240	RF00804	3	113	68	4	112	64	Gene; miRNA;	microRNA mir-240
mir-351	RF00805	2	98	92	5	98	95	Gene; miRNA;	microRNA mir-351
mir-350	RF00806	10	96	88	43	95	90	Gene; miRNA;	microRNA mir-350
mir-314	RF00807	6	88	83	20	89	91	Gene; miRNA;	microRNA mir-314
mir-86	RF00808	5	96	79	11	94	64	Gene; miRNA;	microRNA mir-86
mir-241	RF00809	4	96	75	6	96	75	Gene; miRNA;	microRNA mir-241
mir-85	RF00810	4	105	69	5	106	68	Gene; miRNA;	microRNA mir-85
mir-84	RF00811	4	110	72	5	114	64	Gene; miRNA;	microRNA mir-84
mir-83	RF00812	4	110	86	6	110	86	Gene; miRNA;	microRNA mir-83
mir-11	RF00813	14	78	70	33	76	75	Gene; miRNA;	microRNA mir-11
mir-316	RF00814	4	88	91	24	88	90	Gene; miRNA;	microRNA mir-316
mir-244	RF00815	4	102	76	5	102	72	Gene; miRNA;	microRNA mir-244
mir-245	RF00816	5	93	61	54	90	81	Gene; miRNA;	microRNA mir-245
mir-80	RF00817	4	101	91	5	101	87	Gene; miRNA;	microRNA mir-80
mir-318	RF00818	5	68	85	20	68	91	Gene; miRNA;	microRNA mir-318
mir-246	RF00819	4	108	65	5	108	69	Gene; miRNA;	microRNA mir-246
mir-248	RF00820	4	104	72	6	104	72	Gene; miRNA;	microRNA mir-248
mir-249	RF00821	4	110	73	5	110	68	Gene; miRNA;	microRNA mir-249
mir-274	RF00822	7	105	78	21	100	84	Gene; miRNA;	microRNA mir-274
lsy-6	RF00823	4	73	78	6	74	75	Gene; miRNA;	microRNA lsy-6
mir-50	RF00824	5	97	71	6	98	69	Gene; miRNA;	microRNA mir-50
mir-344	RF00825	32	93	66	315	94	65	Gene; miRNA;	microRNA mir-344
mir-55	RF00826	3	97	76	5	98	69	Gene; miRNA;	microRNA mir-55
mir-77	RF00827	5	98	76	7	99	72	Gene; miRNA;	microRNA mir-77
mir-75	RF00828	4	98	70	5	97	66	Gene; miRNA;	microRNA mir-75
mir-149	RF00829	3	89	92	25	88	95	Gene; miRNA;	microRNA mir-149
mir-74	RF00830	6	95	67	10	96	64	Gene; miRNA;	microRNA mir-74
mir-73	RF00831	7	100	70	9	101	66	Gene; miRNA;	microRNA mir-73
mir-71	RF00832	15	58	70	30	63	70	Gene; miRNA;	microRNA mir-71
mir-70	RF00833	4	118	56	5	119	60	Gene; miRNA;	microRNA mir-70
mir-268	RF00834	4	89	78	8	85	73	Gene; miRNA;	microRNA mir-268
mir-58	RF00835	4	98	88	7	98	84	Gene; miRNA;	microRNA mir-58
mir-250	RF00836	4	80	84	6	79	84	Gene; miRNA;	microRNA mir-250
mir-251	RF00837	4	96	78	5	98	77	Gene; miRNA;	microRNA mir-251
mir-252	RF00838	6	79	71	11	79	66	Gene; miRNA;	microRNA mir-252
mir-452	RF00839	4	85	88	45	84	95	Gene; miRNA;	microRNA mir-452
mir-374	RF00840	14	70	79	64	71	83	Gene; miRNA;	microRNA mir-374
mir-384	RF00841	17	92	70	257	92	61	Gene; miRNA;	microRNA mir-384
MIR403	RF00842	11	106	68	46	113	73	Gene; miRNA;	microRNA MIR403
mir-228	RF00843	4	97	88	7	98	80	Gene; miRNA;	microRNA mir-228
mir-67	RF00844	16	65	79	45	66	84	Gene; miRNA;	microRNA mir-67
MIR158	RF00845	2	100	91	4	104	76	Gene; miRNA;	microRNA MIR158
mir-64	RF00846	4	106	61	24	110	69	Gene; miRNA;	microRNA mir-64
mir-62	RF00847	4	60	93	5	60	93	Gene; miRNA;	microRNA mir-62
mir-61	RF00848	4	86	75	6	88	75	Gene; miRNA;	microRNA mir-61
mir-60	RF00849	4	72	89	7	71	88	Gene; miRNA;	microRNA mir-60
mir-259	RF00850	4	102	79	7	93	79	Gene; miRNA;	microRNA mir-259
mir-230	RF00851	2	97	72	5	96	72	Gene; miRNA;	microRNA mir-230
mir-231	RF00852	4	80	85	7	81	77	Gene; miRNA;	microRNA mir-231
mir-304	RF00853	5	88	92	18	88	95	Gene; miRNA;	microRNA mir-304
mir-5	RF00854	6	71	90	22	70	92	Gene; miRNA;	microRNA mir-5
mir-254	RF00855	4	109	75	5	110	73	Gene; miRNA;	microRNA mir-254
mir-232	RF00856	3	97	79	6	98	80	Gene; miRNA;	microRNA mir-232
mir-233	RF00857	4	98	82	5	97	76	Gene; miRNA;	microRNA mir-233
mir-306	RF00858	7	86	69	19	84	78	Gene; miRNA;	microRNA mir-306
mir-234	RF00859	4	100	69	6	98	60	Gene; miRNA;	microRNA mir-234
mir-488	RF00861	5	82	93	37	82	92	Gene; miRNA;	microRNA mir-488
mir-491	RF00862	5	83	88	41	82	95	Gene; miRNA;	microRNA mir-491
mir-BART17	RF00863	2	103	72	17	102	97	Gene; miRNA;	microRNA mir-BART17
mir-BART20	RF00864	2	80	81	9	80	96	Gene; miRNA;	microRNA mir-BART20
MIR169_5	RF00865	6	133	66	146	147	52	Gene; miRNA;	microRNA MIR169_5
mir-BART3	RF00866	2	75	81	35	75	90	Gene; miRNA;	microRNA mir-BART3
mir-BART5	RF00867	2	89	84	18	89	95	Gene; miRNA;	microRNA mir-BART5
mir-BART15	RF00868	2	78	80	18	78	97	Gene; miRNA;	microRNA mir-BART15
mir-BART7	RF00869	2	85	83	15	85	98	Gene; miRNA;	microRNA mir-BART7
mir-423	RF00870	5	80	86	39	80	98	Gene; miRNA;	microRNA mir-423
mir-689	RF00871	20	109	85	491	104	80	Gene; miRNA;	microRNA mir-689
mir-652	RF00872	17	96	75	448	96	64	Gene; miRNA;	microRNA mir-652
mir-550	RF00873	3	97	96	35	96	94	Gene; miRNA;	microRNA mir-550
mir-BART12	RF00874	2	95	72	15	95	96	Gene; miRNA;	microRNA mir-BART12
mir-692	RF00875	13	81	76	1914	80	65	Gene; miRNA;	microRNA mir-692
mir-684	RF00876	30	88	86	1607	86	70	Gene; miRNA;	microRNA mir-684
mir-592	RF00877	5	87	90	52	87	98	Gene; miRNA;	microRNA mir-592
mir-456	RF00878	7	106	71	10	105	73	Gene; miRNA;	microRNA mir-456
mir-615	RF00879	6	96	96	40	94	96	Gene; miRNA;	microRNA mir-615
MIR811	RF00882	5	189	82	519	186	68	Gene; miRNA;	microRNA MIR811
MIR820	RF00883	2	181	94	33	179	60	Gene; miRNA;	microRNA MIR820
MIR815	RF00884	3	80	80	72	81	66	Gene; miRNA;	microRNA MIR815
MIR821	RF00885	5	274	88	2316	270	71	Gene; miRNA;	microRNA MIR821
MIR807	RF00886	34	175	85	422	172	83	Gene; miRNA;	microRNA MIR807
mir-802	RF00887	15	94	87	53	93	87	Gene; miRNA;	microRNA mir-802
mir-770	RF00888	4	97	77	24	95	86	Gene; miRNA;	microRNA mir-770
mir-668	RF00890	8	63	87	33	64	92	Gene; miRNA;	microRNA mir-668
mir-671	RF00891	3	75	99	55	75	98	Gene; miRNA;	microRNA mir-671
mir-551	RF00892	25	85	74	79	85	75	Gene; miRNA;	microRNA mir-551
MIR854	RF00893	3	221	98	141	217	82	Gene; miRNA;	microRNA MIR854
mir-790	RF00894	4	70	84	8	71	79	Gene; miRNA;	microRNA mir-790
mir-786	RF00895	2	90	62	2	90	62	Gene; miRNA;	microRNA mir-786
mir-787	RF00896	3	90	59	3	90	59	Gene; miRNA;	microRNA mir-787
mir-675	RF00897	11	72	87	54	72	93	Gene; miRNA;	microRNA mir-675
mir-242	RF00898	4	70	79	5	70	79	Gene; miRNA;	microRNA mir-242
mir-235	RF00899	4	72	81	8	71	80	Gene; miRNA;	microRNA mir-235
mir-255	RF00900	4	107	66	6	111	72	Gene; miRNA;	microRNA mir-255
MIR845_1	RF00901	2	88	80	4	88	87	Gene; miRNA;	microRNA MIR845_1
mir-791	RF00902	3	86	74	5	85	70	Gene; miRNA;	microRNA mir-791
mir-359	RF00903	4	90	72	5	90	65	Gene; miRNA;	microRNA mir-359
mir-392	RF00904	3	71	72	3	71	72	Gene; miRNA;	microRNA mir-392
mir-789	RF00905	3	96	68	7	92	55	Gene; miRNA;	microRNA mir-789
MIR1122	RF00906	34	108	60	5191	125	48	Gene; miRNA;	microRNA MIR1122
mir-941	RF00907	2	89	94	120	81	72	Gene; miRNA;	microRNA mir-941
MIR529	RF00908	3	131	77	14	130	83	Gene; miRNA;	microRNA MIR529
mir-883	RF00909	3	77	85	14	76	77	Gene; miRNA;	microRNA mir-883
mir-873	RF00910	3	77	97	39	77	98	Gene; miRNA;	microRNA mir-873
mir-672	RF00911	9	100	81	26	99	89	Gene; miRNA;	microRNA mir-672
mir-877	RF00912	14	86	82	60	85	89	Gene; miRNA;	microRNA mir-877
mir-674	RF00914	2	100	99	5	100	99	Gene; miRNA;	microRNA mir-674
mir-760	RF00915	8	79	90	29	79	97	Gene; miRNA;	microRNA mir-760
mir-708	RF00917	24	83	78	422	83	65	Gene; miRNA;	microRNA mir-708
mir-872	RF00918	7	80	85	23	80	84	Gene; miRNA;	microRNA mir-872
mir-874	RF00919	4	77	99	42	77	98	Gene; miRNA;	microRNA mir-874
MIR444	RF00920	4	148	75	24	142	53	Gene; miRNA;	microRNA MIR444
mir-665	RF00921	8	91	89	30	89	89	Gene; miRNA;	microRNA mir-665
mir-673	RF00922	2	76	98	6	76	99	Gene; miRNA;	microRNA mir-673
MIR1027	RF00925	2	142	100	3	142	98	Gene; miRNA;	microRNA MIR1027
MIR1151	RF00926	2	144	90	2	144	90	Gene; miRNA;	microRNA MIR1151
mir-582	RF00927	9	98	91	38	98	93	Gene; miRNA;	microRNA mir-582
mir-590	RF00928	12	96	75	88	98	69	Gene; miRNA;	microRNA mir-590
mir-574	RF00929	3	77	94	16	76	90	Gene; miRNA;	microRNA mir-574
mir-879	RF00931	2	76	95	42	72	64	Gene; miRNA;	microRNA mir-879
mir-471	RF00932	2	78	98	6	78	99	Gene; miRNA;	microRNA mir-471
mir-875	RF00933	10	76	91	59	67	89	Gene; miRNA;	microRNA mir-875
mir-463	RF00934	2	81	91	15	76	74	Gene; miRNA;	microRNA mir-463
mir-876	RF00935	4	81	89	44	81	94	Gene; miRNA;	microRNA mir-876
mir-744	RF00936	5	100	94	40	100	97	Gene; miRNA;	microRNA mir-744
mir-653	RF00937	15	97	82	45	97	86	Gene; miRNA;	microRNA mir-653
mir-504	RF00939	6	83	94	37	83	96	Gene; miRNA;	microRNA mir-504
mir-327	RF00940	2	61	87	32	61	79	Gene; miRNA;	microRNA mir-327
mir-434	RF00941	2	94	92	47	78	66	Gene; miRNA;	microRNA mir-434
mir-1224	RF00942	11	85	89	38	85	88	Gene; miRNA;	microRNA mir-1224
MIR824	RF00943	2	644	55	50	607	93	Gene; miRNA;	microRNA MIR824
mir-1226	RF00945	3	75	86	19	75	83	Gene; miRNA;	microRNA mir-1226
mir-1225	RF00946	8	92	95	37	92	96	Gene; miRNA;	microRNA mir-1225
mir-929	RF00947	16	94	73	38	95	76	Gene; miRNA;	microRNA mir-929
mir-996	RF00948	6	98	72	32	96	75	Gene; miRNA;	microRNA mir-996
mir-983	RF00949	3	98	73	15	97	82	Gene; miRNA;	microRNA mir-983
mir-927	RF00950	15	76	77	32	77	81	Gene; miRNA;	microRNA mir-927
mir-1302	RF00951	36	51	78	37205	51	71	Gene; miRNA;	microRNA mir-1302
mir-650	RF00952	13	94	84	788	93	77	Gene; miRNA;	microRNA mir-650
mir-1497	RF00953	2	73	81	3	73	87	Gene; miRNA;	microRNA mir-1497
MIR1446	RF00954	5	104	84	12	103	62	Gene; miRNA;	microRNA MIR1446
mir-1829	RF00955	3	60	90	6	60	83	Gene; miRNA;	microRNA mir-1829
MIR1444	RF00956	3	85	80	8	85	87	Gene; miRNA;	microRNA MIR1444
mir-663	RF00957	14	89	77	466	89	81	Gene; miRNA;	microRNA mir-663
mir-498	RF00958	6	121	65	24	122	74	Gene; miRNA;	microRNA mir-498
mir-612	RF00959	6	100	77	31	98	82	Gene; miRNA;	microRNA mir-612
mir-661	RF00960	4	98	80	15	92	83	Gene; miRNA;	microRNA mir-661
mir-581	RF00961	2	96	94	23	85	56	Gene; miRNA;	microRNA mir-581
mir-586	RF00962	2	98	93	13	96	79	Gene; miRNA;	microRNA mir-586
mir-642	RF00963	2	97	95	10	95	95	Gene; miRNA;	microRNA mir-642
mir-938	RF00964	2	83	87	11	83	97	Gene; miRNA;	microRNA mir-938
mir-549	RF00965	2	95	99	10	96	98	Gene; miRNA;	microRNA mir-549
mir-676	RF00966	10	88	88	35	86	85	Gene; miRNA;	microRNA mir-676
mir-281	RF00967	2	82	76	5	81	64	Gene; miRNA;	microRNA mir-281
mir-626	RF00968	8	96	63	51	80	55	Gene; miRNA;	microRNA mir-626
mir-556	RF00969	2	95	89	13	92	84	Gene; miRNA;	microRNA mir-556
mir-648	RF00970	2	94	93	15	94	95	Gene; miRNA;	microRNA mir-648
mir-578	RF00971	3	93	95	19	86	53	Gene; miRNA;	microRNA mir-578
mir-651	RF00972	5	95	78	20	96	79	Gene; miRNA;	microRNA mir-651
mir-597	RF00973	4	97	82	22	97	75	Gene; miRNA;	microRNA mir-597
mir-607	RF00974	3	97	95	11	98	87	Gene; miRNA;	microRNA mir-607
MIR845_2	RF00975	2	131	93	193	130	82	Gene; miRNA;	microRNA MIR845_2
mir-583	RF00976	2	75	96	10	75	99	Gene; miRNA;	microRNA mir-583
mir-600	RF00977	4	81	83	20	80	92	Gene; miRNA;	microRNA mir-600
mir-638	RF00978	2	100	97	25	99	91	Gene; miRNA;	microRNA mir-638
mir-553	RF00979	3	66	77	14	56	84	Gene; miRNA;	microRNA mir-553
mir-643	RF00980	2	97	91	12	92	91	Gene; miRNA;	microRNA mir-643
mir-939	RF00981	3	82	99	13	82	94	Gene; miRNA;	microRNA mir-939
mir-200	RF00982	2	85	63	3	85	73	Gene; miRNA;	microRNA mir-200
mir-662	RF00983	14	94	87	36	94	84	Gene; miRNA;	microRNA mir-662
mir-576	RF00984	2	98	92	14	99	72	Gene; miRNA;	microRNA mir-576
mir-640	RF00985	3	95	97	58	95	70	Gene; miRNA;	microRNA mir-640
mir-920	RF00986	6	75	75	19	74	82	Gene; miRNA;	microRNA mir-920
mir-589	RF00987	2	99	96	16	98	90	Gene; miRNA;	microRNA mir-589
mir-657	RF00988	2	98	89	13	97	96	Gene; miRNA;	microRNA mir-657
mir-492	RF00989	16	115	84	1419	114	62	Gene; miRNA;	microRNA mir-492
mir-552	RF00990	3	95	94	24	94	79	Gene; miRNA;	microRNA mir-552
mir-599	RF00991	11	94	85	45	93	88	Gene; miRNA;	microRNA mir-599
mir-593	RF00992	3	101	80	20	102	87	Gene; miRNA;	microRNA mir-593
mir-1473	RF00993	2	81	80	3	80	86	Gene; miRNA;	microRNA mir-1473
mir-1255	RF00994	12	66	80	38391	65	80	Gene; miRNA;	microRNA mir-1255
mir-616	RF00995	3	94	81	30	93	83	Gene; miRNA;	microRNA mir-616
mir-631	RF00996	10	74	76	30	72	86	Gene; miRNA;	microRNA mir-631
mir-942	RF00997	2	86	97	12	86	99	Gene; miRNA;	microRNA mir-942
mir-562	RF00998	19	96	68	25821	102	71	Gene; miRNA;	microRNA mir-562
mir-924	RF00999	4	53	84	85	51	78	Gene; miRNA;	microRNA mir-924
mir-580	RF01000	2	97	95	11	97	98	Gene; miRNA;	microRNA mir-580
mir-609	RF01001	2	94	96	13	94	98	Gene; miRNA;	microRNA mir-609
mir-936	RF01002	4	97	78	30	97	73	Gene; miRNA;	microRNA mir-936
mir-563	RF01003	7	79	74	26	79	79	Gene; miRNA;	microRNA mir-563
mir-557	RF01004	2	71	92	16	72	75	Gene; miRNA;	microRNA mir-557
MIR530	RF01005	3	164	72	39	135	48	Gene; miRNA;	microRNA MIR530
mir-601	RF01006	3	79	96	15	78	84	Gene; miRNA;	microRNA mir-601
mir-624	RF01007	2	97	97	13	98	87	Gene; miRNA;	microRNA mir-624
mir-636	RF01008	5	96	80	20	98	89	Gene; miRNA;	microRNA mir-636
mir-M7	RF01009	2	73	73	50	75	86	Gene; miRNA;	microRNA mir-M7
mir-632	RF01010	16	94	83	41	93	84	Gene; miRNA;	microRNA mir-632
mir-605	RF01011	2	83	95	11	84	98	Gene; miRNA;	microRNA mir-605
mir-628	RF01012	9	94	79	44	95	91	Gene; miRNA;	microRNA mir-628
mir-577	RF01013	2	96	95	12	96	98	Gene; miRNA;	microRNA mir-577
mir-1306	RF01014	8	74	91	72	74	96	Gene; miRNA;	microRNA mir-1306
mir-885	RF01015	4	73	80	240	78	75	Gene; miRNA;	microRNA mir-885
mir-584	RF01016	16	102	63	1696	117	54	Gene; miRNA;	microRNA mir-584
mir-625	RF01017	2	84	90	7	78	97	Gene; miRNA;	microRNA mir-625
mir-569	RF01018	12	95	85	43	94	86	Gene; miRNA;	microRNA mir-569
mir-922	RF01019	13	79	80	34	80	79	Gene; miRNA;	microRNA mir-922
mir-572	RF01020	3	57	91	27	55	94	Gene; miRNA;	microRNA mir-572
mir-558	RF01021	3	93	97	16	94	83	Gene; miRNA;	microRNA mir-558
mir-611	RF01022	8	67	77	33	67	79	Gene; miRNA;	microRNA mir-611
mir-940	RF01023	8	93	92	27	93	93	Gene; miRNA;	microRNA mir-940
mir-944	RF01024	2	88	93	14	85	76	Gene; miRNA;	microRNA mir-944
mir-934	RF01025	2	83	93	12	80	99	Gene; miRNA;	microRNA mir-934
MIR828	RF01026	5	91	65	18	101	55	Gene; miRNA;	microRNA MIR828
mir-765	RF01027	2	114	92	16	110	91	Gene; miRNA;	microRNA mir-765
mir-633	RF01028	3	97	74	827	76	58	Gene; miRNA;	microRNA mir-633
mir-649	RF01029	7	102	66	7891	103	54	Gene; miRNA;	microRNA mir-649
mir-422	RF01030	3	88	78	23	90	68	Gene; miRNA;	microRNA mir-422
mir-639	RF01031	6	97	80	24	97	85	Gene; miRNA;	microRNA mir-639
mir-554	RF01032	4	96	79	32	94	70	Gene; miRNA;	microRNA mir-554
mir-767	RF01033	14	109	83	37	109	86	Gene; miRNA;	microRNA mir-767
mir-618	RF01034	5	101	94	19	101	79	Gene; miRNA;	microRNA mir-618
mir-887	RF01035	3	79	82	18	78	87	Gene; miRNA;	microRNA mir-887
mir-567	RF01036	9	94	71	25	94	69	Gene; miRNA;	microRNA mir-567
mir-644	RF01037	3	93	91	274	99	61	Gene; miRNA;	microRNA mir-644
mir-1307	RF01038	7	100	95	29	99	95	Gene; miRNA;	microRNA mir-1307
mir-937	RF01039	8	85	78	31	85	80	Gene; miRNA;	microRNA mir-937
mir-573	RF01040	2	99	94	16	98	82	Gene; miRNA;	microRNA mir-573
mir-604	RF01041	2	94	97	12	94	98	Gene; miRNA;	microRNA mir-604
mir-891	RF01042	7	78	87	92	78	74	Gene; miRNA;	microRNA mir-891
MIR1023	RF01043	4	162	59	5	161	55	Gene; miRNA;	microRNA MIR1023
mir-345	RF01044	10	96	86	44	97	84	Gene; miRNA;	microRNA mir-345
mir-544	RF01045	26	96	70	25455	103	62	Gene; miRNA;	microRNA mir-544
WLE3	RF01046	10	43	86	37	43	87	Cis-reg;	Wingless localisation element 3 (WLE3)
HBV	RF01047	6	60	93	6910	60	98	Cis-reg;	HBV RNA encapsidation signal epsilon
Sacc_telomerase	RF01050	13	1189	71	62	1087	78	Gene;	Saccharomyces telomerase
GEMM_RNA_motif	RF01051	162	86	64	1049	86	60	Cis-reg;	GEMM cis-regulatory element
Arthropod_7SK	RF01052	19	397	64	47	332	59	Gene;	Arthropod 7SK RNA
Deinococcus_Y_RNA	RF01053	2	126	100	2	126	100	Gene;	Deinococcus radiodurans Y RNA
preQ1-II	RF01054	14	104	68	71	105	70	Cis-reg; riboswitch;	preQ1-II (pre queuosine) riboswitch
MOCO_RNA_motif	RF01055	179	141	59	424	138	58	Cis-reg; riboswitch;	Moco (molybdenum cofactor) riboswitch
Mg_sensor	RF01056	4	114	78	109	114	87	Cis-reg; riboswitch;	Magnesium Sensor
SAH_riboswitch	RF01057	52	84	63	225	80	61	Cis-reg; riboswitch;	S-adenosyl-L-homocysteine riboswitch
MIR806	RF01058	8	241	87	17853	239	76	Gene; miRNA;	microRNA MIR806
mir-598	RF01059	30	95	65	4656	91	54	Gene; miRNA;	microRNA mir-598
mir-548	RF01061	54	83	76	51442	80	64	Gene; miRNA;	microRNA mir-548
MIR812	RF01062	9	170	74	29421	171	68	Gene; miRNA;	microRNA MIR812
mir-324	RF01063	27	85	62	2955	78	51	Gene; miRNA;	microRNA mir-324
mir-253	RF01064	4	100	81	6	100	78	Gene; miRNA;	microRNA mir-253
23S-methyl	RF01065	19	100	59	118	100	63	Cis-reg;	23S methyl RNA motif
6C	RF01066	20	75	73	65	76	82	Cis-reg;	6C RNA
ATPC	RF01067	92	91	73	144	89	77	Gene;	ATPC RNA motif
mini-ykkC	RF01068	73	47	61	388	47	66	Cis-reg;	mini-ykkC RNA motif
purD	RF01069	21	126	56	69	126	58	Cis-reg;	purD RNA motif
sucA	RF01070	35	83	72	114	82	81	Cis-reg;	SucA RNA motif
OLE	RF01071	20	604	65	51	590	65	Gene;	Ornate Large Extremophilic RNA
TMV_UPD-PK3	RF01072	27	30	79	294	28	88	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
GP_knot1	RF01073	9	61	82	7012	62	77	Cis-reg;	Gag/pol translational readthrough site
RF_site1	RF01074	4	40	84	12	40	87	Cis-reg;	Putative RNA-dependent RNA polymerase ribosomal frameshift site
TLS-PK1	RF01075	2	96	90	23	95	98	Cis-reg;	Pseudoknot of tRNA-like structure
RF_site2	RF01076	2	72	93	137	71	96	Cis-reg;	Polymerase ribosomal frameshift site
TLS-PK2	RF01077	4	66	87	44	66	92	Cis-reg;	Pseudoknot of tRNA-like structure
PK-PYVV	RF01078	3	57	86	5	57	90	Cis-reg;	3'-terminal pseudoknot in PYVV
RF_site3	RF01079	2	39	97	18	39	99	Cis-reg;	Putative RNA-dependent RNA polymerase ribosomal frameshift site
UPD-PKib	RF01080	4	32	86	16	31	89	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBWMV1_UPD-PKe	RF01081	3	26	87	14	26	95	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBWMV1_UPD-PKh	RF01082	2	25	89	11	25	95	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
UPD-PK2	RF01083	4	21	94	22	21	99	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
TLS-PK3	RF01084	8	128	59	294	125	72	Cis-reg;	Pseudoknot of tRNA-like structure
TLS-PK4	RF01085	2	117	90	8	116	95	Cis-reg;	Pseudoknot of tRNA-like structure
LR-PK1	RF01086	15	344	77	1108	276	57	Cis-reg;	Long range pseudoknot
PK-repZ	RF01087	6	149	91	37	142	89	Cis-reg;	Pseudoknot of the regulatory region of the repZ gene
TLS-PK5	RF01088	3	67	82	19	67	92	Cis-reg;	Pseudoknot of tRNA-like structure
PK-repBA	RF01089	7	123	65	31	115	60	Cis-reg;	Pseudoknot of the regulatory region of the repBA gene
RF_site4	RF01090	7	66	89	52	65	97	Cis-reg;	Edr gene ribosomal frameshift signal
PK-SPCSV	RF01091	2	61	100	2	61	100	Cis-reg;	3'-terminal pseudoknot in SPCSV
GP_knot2	RF01092	2	61	100	13	61	90	Cis-reg;	Gag/pol translational readthrough site
RF_site5	RF01093	12	60	80	76	60	81	Cis-reg;	Ma3 gene ribosomal frameshift signal
RF_site6	RF01094	2	118	87	2	118	87	Cis-reg;	Polymerase ribosomal frameshift site
PK-CuYV_BPYV	RF01095	2	56	100	4	56	100	Cis-reg;	3'-terminal pseudoknot of CuYV/BPYV
PK-HAV	RF01096	2	55	93	47	54	90	Cis-reg;	3'-terminal pseudoknot of HepA virus
RF_site8	RF01097	4	52	94	744	51	87	Cis-reg;	Gag/pro ribosomal frameshift site
RF_site9	RF01098	2	49	95	29	48	90	Cis-reg;	Gag/pro ribosomal frameshift site
PK-IAV	RF01099	32	48	88	8075	48	95	Cis-reg;	Pseudoknot of influenza A virus gene
PK-BYV	RF01100	2	40	100	4	40	96	Cis-reg;	3'-terminal pseudoknot in BYV
TLS-PK6	RF01101	3	40	91	32	39	96	Cis-reg;	Pseudoknot of tRNA-like structure
PK1-TEV_CVMV	RF01102	2	36	81	8	36	83	Cis-reg;	5'-leader pseudoknot of TEV/CVMV
UPD-PKc	RF01103	2	29	95	12	29	97	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBWMV2_UPD-PKb	RF01104	3	29	93	13	28	91	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBWMV2_UPD-PKl	RF01105	2	27	100	6	27	96	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBWMV1_UPD-PKb	RF01106	2	25	94	6	25	93	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBRMV1_UPD-PKf	RF01107	2	27	100	12	27	99	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
BMV3_UPD-PK1	RF01108	2	26	100	7	26	91	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBRMV1_UPD-PKd	RF01109	2	21	100	13	21	98	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
PSLVbeta_UPD-PK2	RF01110	2	22	100	3	22	95	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
SBWMV2_UPD-PKk	RF01111	2	21	100	8	21	100	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
UPD-PKg	RF01112	2	21	62	12	21	89	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
BMV3_UPD-PK3	RF01113	2	23	93	15	23	93	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
TMV_UPD-PK1	RF01114	2	22	100	32	22	99	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
TMV_UPD-PK2	RF01115	3	22	92	61	22	94	Cis-reg;	Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
Yfr1	RF01116	37	58	71	191	56	79	Gene; sRNA;	Cyanobacterial functional RNA 1
ciona-mir-92	RF01117	2	81	75	2	81	75	Gene; miRNA;	Ciona microRNA mir-92
PK-G12rRNA	RF01118	368	108	78	12499	108	79	Gene; rRNA;	Pseudoknot of the domain G(G12) of 23S ribosomal RNA
sR32	RF01119	3	57	92	5	51	83	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR32
sR33	RF01120	2	55	76	4	54	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR33
sR38	RF01121	3	59	96	4	59	91	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR38
sR39	RF01122	5	57	87	11	58	88	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR39
sR35	RF01123	2	57	95	5	51	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR35
sR36	RF01124	5	55	87	8	55	89	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR36
sR4	RF01125	11	57	65	23	57	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR4
sR41	RF01126	3	53	85	5	53	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR41
sR42	RF01127	3	63	84	3	63	84	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR42
sR43	RF01128	3	56	93	7	61	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR42
sR44	RF01129	3	55	87	5	54	89	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR44
sR46	RF01130	7	56	84	7	56	84	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR46
sR47	RF01131	7	55	76	12	55	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR47
sR48	RF01132	2	57	79	4	57	87	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR48
sR3	RF01133	17	61	65	23	61	65	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR3
sR30	RF01134	3	56	90	3	56	90	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR30
sR24	RF01135	3	55	97	4	53	97	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR24
sR28	RF01136	6	54	75	12	54	79	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR28
sR21	RF01137	2	66	57	2	66	57	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR21
sR23	RF01138	6	53	67	11	54	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR23
sR2	RF01139	10	55	58	23	54	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR2
sR20	RF01140	6	55	65	15	56	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR20
sR18	RF01141	5	55	73	8	55	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR18
sR19	RF01142	3	63	93	6	62	91	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR19
sR16	RF01143	2	55	56	3	54	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR16
sR17	RF01144	6	55	66	10	53	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR17
sR14	RF01145	8	54	69	16	54	72	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR14
sR15	RF01146	2	60	57	3	58	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR15
sR12	RF01147	5	54	71	10	54	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR12
sR13	RF01148	6	55	67	15	55	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR13
sR10	RF01149	4	54	86	5	54	87	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR10
sR11	RF01150	8	57	57	20	55	54	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR11
snoU82P	RF01151	13	55	88	57	53	86	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U82P
sR1	RF01152	12	55	65	24	54	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR1
sn3060	RF01153	3	66	99	9	66	96	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn3060
snoU43C	RF01154	3	65	73	6	60	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U43C
snoR101	RF01155	5	64	84	26	65	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR101
SNORD123	RF01156	12	69	89	52	69	94	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD123
sn1185	RF01157	4	69	92	9	69	90	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn1185
SNORD108	RF01158	4	71	76	18	70	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD108
snoU18	RF01159	16	71	81	99	60	65	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U18
sn2841	RF01160	2	71	98	9	71	97	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2841
SNORD5	RF01161	21	71	79	110	65	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD5
sn668	RF01162	4	73	93	10	70	94	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn668
snoR64a	RF01163	4	77	71	22	73	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR64a
SNORD107	RF01164	14	73	86	53	72	88	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD107
sn2317	RF01165	4	71	83	9	71	86	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2317
sn3071	RF01166	2	76	98	10	76	96	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn3071
sn2429	RF01167	4	76	90	8	76	92	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2429
SNORD126	RF01168	6	77	86	42	76	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD126
SNORD112	RF01169	9	76	83	732	70	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD112
snoU61	RF01170	6	83	76	62	77	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U61
snoR4	RF01171	2	79	62	16	63	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR4
sn2343	RF01172	3	79	89	8	78	91	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2343
snoU105B	RF01173	13	79	79	40	79	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U105B
snoU43	RF01174	8	80	81	21	80	88	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U43
snoU83D	RF01175	8	79	83	26	77	83	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U83
snR78	RF01176	8	82	75	34	78	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR78
snR67	RF01177	16	90	72	37	85	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR67
snoR77Y	RF01178	6	85	75	68	84	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR77Y
snoU83	RF01179	6	84	62	23	82	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U83
snoR110	RF01180	2	86	91	6	81	83	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR110
snR77	RF01181	15	83	83	36	84	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR77
SNORD11	RF01182	18	84	86	92	81	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD11
SNORD19B	RF01183	16	82	76	54	81	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD19B
snR79	RF01184	18	85	72	74	81	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR79
snR75	RF01185	62	87	69	108	86	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR75
SNORD127	RF01186	13	84	86	48	84	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD127
snoU83C	RF01187	2	86	82	13	79	60	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U83C
snR56	RF01188	16	84	69	159	79	62	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR56
sn1502	RF01189	4	87	94	9	86	96	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn1502
snR50	RF01190	3	88	94	28	77	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR50
SNORD121A	RF01191	26	82	81	125	79	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD121A
SNORD11B	RF01192	27	84	76	85	84	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD11B
snoR20a	RF01193	5	85	71	33	88	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR20a
sn2903	RF01194	4	91	99	9	91	98	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2903
snR52	RF01195	5	91	97	25	88	87	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR52
snoZ30a	RF01196	10	91	81	19	91	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z30a
snR39	RF01197	4	97	84	31	91	77	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR39
snoR69Y	RF01198	7	98	68	60	95	69	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR69Y
snR58	RF01199	3	97	80	32	92	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR58
SNORD125	RF01200	16	97	81	47	96	84	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD125
snR40	RF01201	17	88	77	37	89	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR40
sn2991	RF01202	4	98	89	8	98	89	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2991
snR47	RF01203	14	95	70	175	75	67	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR47
snR65	RF01204	5	99	93	65	94	58	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR65
snR62	RF01205	2	100	95	32	92	65	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR62
snoR109	RF01206	6	94	80	23	93	72	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR109
snR73	RF01207	5	104	82	89	95	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR73
snoR99	RF01208	9	103	69	44	101	67	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR99
snR76	RF01209	15	99	78	43	97	78	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR76
snoU13	RF01210	35	102	76	7629	100	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U13
SNORD124	RF01211	18	103	82	42	102	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD124
sn2524	RF01212	2	107	66	30	105	62	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2524
snoR103	RF01213	11	106	69	51	105	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR103
snR51	RF01214	17	96	72	64	93	59	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR51
snoR97	RF01215	7	107	72	45	105	67	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR97
snR87	RF01216	4	109	91	27	109	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR87
snoR72Y	RF01217	10	87	64	99	87	59	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR72Y
snR41	RF01218	18	103	75	45	102	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR41
snoR100	RF01219	9	114	72	40	112	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR100
snoR104	RF01220	8	117	67	36	117	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR104
snoU6-47	RF01221	3	130	72	16	126	58	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U6-47
sn2417	RF01222	3	122	93	10	122	92	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sn2417
snR13	RF01223	2	123	96	52	78	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR13
snoR80	RF01224	9	128	72	40	129	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR80
ACA64	RF01225	26	127	77	230	124	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA ACA64
snoZ5	RF01226	8	116	82	83	96	51	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA Z5
snoR83	RF01227	7	129	70	62	121	65	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR83
snoR111	RF01228	6	126	66	17	129	64	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR111
SNORA84	RF01229	28	133	77	104	128	75	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA84
snoR77	RF01230	5	129	74	42	128	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR77
snoR74	RF01231	9	132	67	89	126	61	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snoR74
snoU40	RF01232	9	110	83	47	101	62	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U40
snoU109	RF01233	26	136	83	313	129	64	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA U109
SNORA47	RF01234	20	136	78	68	133	73	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA47
snR68	RF01235	4	137	94	23	122	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR68
snoU19	RF01236	3	142	67	16	135	56	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA U19
snR161	RF01237	10	162	67	28	158	72	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR161
snR70	RF01238	8	163	79	31	150	56	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR70
snR49	RF01239	6	171	75	39	151	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR49
snR85	RF01240	5	179	81	22	162	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR85
SNORA81	RF01241	24	177	81	194	165	63	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA SNORA81
snR36	RF01242	10	184	70	63	182	53	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR36
snR33	RF01243	5	183	89	18	177	83	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR33
snR4	RF01244	5	185	81	28	158	59	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR4
snR9	RF01245	5	186	90	24	174	73	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR9
snR81	RF01246	3	188	90	15	170	95	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR81
snR32	RF01247	11	194	65	43	180	55	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR32
snR8	RF01248	11	181	70	36	180	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR8
snR190	RF01249	5	197	90	28	169	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR190
snR189	RF01250	4	192	90	22	176	78	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR189
snR3	RF01251	4	191	86	28	175	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR3
snR5	RF01252	11	191	76	36	184	67	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR5
snR46	RF01253	6	199	80	36	171	64	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR46
snR34	RF01254	4	205	90	24	203	80	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR34
snR35	RF01255	10	198	75	29	195	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR35
snR43	RF01256	17	206	60	42	199	58	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR43
snR31	RF01257	8	221	73	27	216	77	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR31
snR10	RF01258	14	247	74	38	250	77	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR10
snR63	RF01259	5	255	91	22	237	83	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR63
snR11	RF01260	6	255	73	22	238	74	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR11
snR82	RF01261	5	273	77	35	222	55	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR82
snR44	RF01262	7	206	86	36	178	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR44
snR191	RF01263	11	270	68	29	271	64	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR191
snR83	RF01264	5	307	87	20	291	80	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR83
snR42	RF01265	5	348	84	37	252	69	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR42
snR45	RF01266	8	183	76	23	170	89	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR45
snR37	RF01267	9	381	69	24	381	76	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR37
snoU2-25	RF01268	17	414	79	51	400	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U2-25
snR80	RF01269	6	175	87	40	166	62	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR80
snR84	RF01270	6	557	75	16	549	81	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR84
snR30	RF01271	5	611	91	21	589	79	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR30
snR86	RF01272	5	998	69	14	999	78	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA snR86
sR34	RF01273	4	54	95	9	53	91	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR34
sR45	RF01274	4	55	90	7	57	82	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR45
sR22	RF01275	4	58	94	7	58	93	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR22
sR53	RF01276	3	59	92	4	59	92	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR53
snoU54	RF01277	26	67	77	89	67	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U54
SNORD109A	RF01278	7	67	89	65	67	92	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD109A
snoR53Y	RF01279	7	82	71	23	78	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR53Y
snoR14	RF01280	7	87	80	28	84	71	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR14
snoR35	RF01281	12	80	75	38	80	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR35
snoU30	RF01283	5	85	75	14	83	70	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U30
snoR8a	RF01284	7	88	73	34	86	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR8a
snoU31b	RF01285	7	84	68	54	85	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U31b
snoR26	RF01286	8	93	74	46	94	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR26
snoR27	RF01287	6	93	70	40	92	56	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR27
snoR31	RF01288	6	94	74	58	94	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR31
snoR17	RF01289	2	104	63	23	64	54	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR17
snoU6-77	RF01290	22	140	65	64	140	64	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U6-77
snoU97	RF01291	22	147	86	59	151	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U97
snoR2	RF01292	11	150	74	85	148	73	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR2/U65
ACA59	RF01293	3	154	73	42	147	62	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA ACA59
snoU89	RF01294	16	263	76	58	248	68	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA U89
snoU90	RF01295	18	329	80	46	321	80	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U90
snoU85	RF01296	21	323	62	104	293	52	Gene; snRNA; snoRNA; HACA-box;	Small nucleolar RNA U85
sR40	RF01297	2	61	100	7	57	88	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR40
snoU35	RF01298	3	69	99	6	66	74	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U25
snR39B	RF01299	18	71	76	133	66	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snR39B
snoU49	RF01300	2	73	95	61	77	75	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA U49
snoR4a	RF01301	2	77	100	4	66	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR4a
snoU36a	RF01302	16	88	73	71	88	70	Gene; snRNA; snoRNA; CD-box;	SnoRNA U36a
sR49	RF01303	3	56	90	4	52	81	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR49
sR5	RF01304	10	53	60	21	53	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR5
sR51	RF01305	3	54	85	7	50	85	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR51
sR52	RF01306	2	58	88	2	58	88	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR52
sR55	RF01307	4	63	90	7	62	83	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR55
sR58	RF01308	5	55	88	9	55	87	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR58
sR60	RF01309	4	55	91	7	55	92	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR60
sR7	RF01310	6	57	57	13	56	63	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR7
sR8	RF01311	7	52	64	11	50	66	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR8
sR9	RF01312	3	59	48	15	55	68	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR9
HHBV_epsilon	RF01313	6	57	92	54	56	93	Cis-reg;	Heron HBV RNA encapsidation signal epsilon
mir-1227	RF01314	3	88	98	15	84	89	Gene; miRNA;	microRNA mir-1227
CRISPR-DR2	RF01315	28	30	76	5220	30	82	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR3	RF01316	20	30	87	771	30	87	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR4	RF01317	42	28	86	4052	28	93	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR5	RF01318	12	37	81	1953	36	87	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR6	RF01319	7	30	92	635	30	89	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR7	RF01320	10	37	79	728	36	82	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR8	RF01321	5	36	71	78	36	74	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR9	RF01322	7	37	83	291	37	84	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR10	RF01323	5	37	75	452	37	81	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR11	RF01324	5	36	89	38	36	94	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR12	RF01325	5	30	91	213	30	95	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR13	RF01326	4	30	95	139	30	96	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR14	RF01327	6	29	91	1080	28	92	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR17	RF01328	3	25	97	62	25	97	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR15	RF01329	3	37	82	15	37	91	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR16	RF01330	6	37	86	71	36	87	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR18	RF01331	6	37	86	120	36	87	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR19	RF01332	4	36	80	1288	36	86	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR20	RF01333	3	36	78	73	36	84	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR21	RF01334	2	37	100	548	37	100	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR22	RF01335	9	36	84	526	36	90	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR23	RF01336	3	36	95	210	36	87	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR24	RF01337	4	30	93	303	30	94	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR25	RF01338	5	25	94	529	25	93	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR27	RF01339	3	25	94	136	25	96	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR29	RF01340	2	37	100	24	37	100	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR30	RF01341	3	38	85	19	38	96	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR32	RF01342	2	37	84	30	37	92	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR33	RF01343	3	37	72	79	36	83	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR34	RF01344	5	36	90	75	35	92	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR35	RF01345	2	36	96	44	35	89	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR36	RF01346	3	36	95	158	36	94	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR37	RF01347	3	35	82	34	34	91	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR38	RF01348	5	35	86	121	34	93	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR40	RF01349	3	30	90	89	30	86	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR41	RF01350	2	29	100	131	29	98	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR42	RF01351	3	29	96	23	28	79	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR43	RF01352	3	29	86	220	27	97	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR44	RF01353	3	28	84	75	28	93	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR45	RF01354	3	24	100	327	24	100	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR26	RF01355	4	25	96	203	25	99	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR28	RF01356	3	24	94	508	24	93	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR31	RF01357	3	37	90	37	37	94	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR39	RF01358	3	31	81	104	31	89	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR46	RF01359	2	38	83	6	38	88	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR47	RF01360	2	37	97	45	36	99	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR48	RF01361	2	37	96	11	37	99	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR49	RF01362	3	47	88	325	46	87	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR50	RF01363	2	46	84	116	45	87	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR51	RF01364	2	37	81	24	37	97	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR52	RF01365	2	37	100	51	36	99	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR53	RF01366	2	37	96	14	37	98	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR54	RF01367	2	37	100	17	37	95	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR55	RF01368	2	37	96	52	36	90	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR56	RF01369	2	37	97	93	37	96	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR57	RF01370	3	37	88	127	36	92	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR58	RF01371	2	37	96	139	37	98	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR59	RF01372	2	37	83	18	36	93	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR60	RF01373	2	37	90	171	37	95	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR61	RF01374	2	37	96	83	37	100	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR62	RF01375	2	37	93	29	37	100	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR63	RF01376	2	37	96	23	37	100	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR64	RF01377	2	37	97	4	37	98	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR65	RF01378	2	37	79	101	37	100	Gene; CRISPR;	CRISPR RNA direct repeat element
CRISPR-DR66	RF01379	4	36	94	161	37	100	Gene; CRISPR;	CRISPR RNA direct repeat element
HIV-1_SD	RF01380	21	19	95	1916	19	99	Cis-reg;	Human immunodeficiency virus type 1 major splice donor
HIV-1_SL3	RF01381	21	23	88	2689	22	99	Cis-reg;	HIV-1 stem-loop 3 Psi packaging signal
HIV-1_SL4	RF01382	22	20	91	9939	20	97	Cis-reg;	HIV-1 stem-loop 4 packaging signal
GRIK4_3p_UTR	RF01383	10	80	74	151	66	76	Gene;	GRIK4 3 prime UTR element
InvR	RF01384	4	91	96	41	91	99	Gene;	Invasion gene-associated RNA
isrA	RF01385	10	126	87	62	122	65	Gene; sRNA;	isrA Hfq binding RNA
isrB	RF01386	4	88	64	28	86	78	Gene; sRNA;	isrB Hfq binding RNA
isrC	RF01387	16	122	92	114	120	87	Gene; sRNA;	isrC Hfq binding RNA
isrD	RF01388	2	51	100	37	51	99	Gene; sRNA;	isrD Hfq binding RNA
isrF	RF01389	3	284	85	12	288	92	Gene; sRNA;	isrF Hfq binding RNA
isrG	RF01390	5	279	87	55	275	83	Gene; sRNA;	isrG Hfq binding RNA
isrH	RF01391	6	280	98	40	272	97	Gene; sRNA;	isrH Hfq binding RNA
isrI	RF01392	30	98	82	60	97	83	Gene; sRNA;	isrI Hfq binding RNA
isrJ	RF01393	5	75	79	39	72	78	Gene; sRNA;	isrJ Hfq binding RNA
isrK	RF01394	55	77	61	458	75	59	Gene; sRNA;	isrK Hfq binding RNA
isrL	RF01395	4	347	86	44	345	92	Gene; sRNA;	isrL Hfq binding RNA
isrN	RF01396	17	141	62	163	138	62	Gene; sRNA;	isrN Hfq binding RNA
isrO	RF01397	6	198	84	46	192	89	Gene; sRNA;	isrO Hfq binding RNA
isrP	RF01398	7	148	97	38	146	97	Gene; sRNA;	isrP Hfq binding RNA
isrQ	RF01399	6	161	97	39	161	97	Gene; sRNA;	isrQ Hfq binding RNA
istR	RF01400	7	130	84	101	129	86	Gene; sRNA;	istR Hfq binding RNA
rseX	RF01401	4	95	99	42	93	97	Gene; sRNA;	rseX Hfq binding RNA
STnc150	RF01402	10	265	87	52	212	79	Gene; sRNA;	STnc150 Hfq binding RNA
STnc290	RF01403	6	65	99	36	65	99	Gene; sRNA;	STnc290 Hfq binding RNA
STnc440	RF01404	4	76	99	39	75	100	Gene; sRNA;	STnc440 Hfq binding RNA
STnc490k	RF01405	76	123	95	1699	122	96	Gene; sRNA;	STnc490k Hfq binding RNA
STnc500	RF01406	8	284	99	36	273	99	Gene; sRNA;	STnc500 Hfq binding RNA
STnc560	RF01407	13	217	93	104	218	87	Gene; sRNA;	STnc560 Hfq binding RNA
sraL	RF01408	7	141	83	122	138	92	Gene; sRNA;	sraL Hfq binding RNA
STnc250	RF01409	4	94	91	43	92	97	Gene; sRNA;	STnc250 Hfq binding RNA
BsrC	RF01410	29	85	78	268	84	78	Gene; sRNA;	BsrC
BsrF	RF01411	11	110	76	100	110	92	Gene; sRNA;	BsrF
BsrG	RF01412	6	257	52	64	255	50	Gene; sRNA;	BsrG
miR-430	RF01413	46	89	59	1096	87	54	Gene; miRNA;	microRNA miR-430
class_I_RNA	RF01414	21	56	78	57	54	78	Gene;	Class I RNA
Flavivirus_SLIV	RF01415	20	73	83	325	73	88	Cis-reg;	Flavivirus 3'UTR stem loop IV
NrrF	RF01416	3	158	96	27	159	89	Gene; antisense;	NrrF RNA
RSV_RNA	RF01417	8	289	89	17593	284	44	Cis-reg;	Retroviral 3'UTR stability element
HIV_POL-1_SL	RF01418	29	113	77	51426	112	92	Cis-reg;	HIV pol-1 stem loop
lsrR	RF01419	309	185	68	1398	182	74	Gene; antisense;	Antisense RNA which regulates isiA expression
snoR113	RF01420	5	103	76	29	107	76	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR113
snoR114	RF01421	24	88	67	74	87	66	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR114
snoR116	RF01422	5	86	74	14	88	73	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR116
snoR117	RF01423	6	79	68	20	81	64	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR117
snoR118	RF01424	8	86	76	52	84	78	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR118
snoR121	RF01425	2	86	90	3	85	82	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR121
snoR126	RF01426	4	99	66	23	98	68	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR126
snoR127	RF01427	3	133	81	13	147	68	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR127
snoR128	RF01428	5	87	75	14	88	70	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR128
snoR130	RF01429	2	119	86	8	121	48	Gene; snRNA; snoRNA; CD-box;	small nucleolar RNA snoR130
snoR134	RF01430	5	146	70	52	145	74	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snoR134
snoR135	RF01431	6	146	76	58	144	66	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snoR135
snoR143	RF01432	3	170	62	31	157	61	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snoR143
snoR137	RF01433	4	145	77	45	140	58	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snoR137
S_pombe_snR3	RF01434	3	166	78	4	166	78	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR3
S_pombe_snR5	RF01435	3	142	84	4	142	80	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR5
S_pombe_snR33	RF01436	3	146	70	4	146	64	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR33
S_pombe_snR10	RF01437	2	167	100	3	165	69	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR10
S_pombe_snR35	RF01438	4	172	85	5	171	82	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR35
S_pombe_snR36	RF01439	2	164	100	2	164	100	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR36
S_pombe_snR42	RF01440	3	209	73	4	210	70	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR42
S_pombe_snR46	RF01441	2	168	100	3	139	81	Gene; snRNA; snoRNA; HACA-box;	small nulceolar RNA snR46
S_pombe_snR90	RF01442	3	155	79	4	154	74	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR90
S_pombe_snR91	RF01443	2	144	99	3	143	79	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR91
S_pombe_snR92	RF01444	3	144	76	3	144	76	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR92
S_pombe_snR94	RF01445	3	210	73	4	203	75	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR94
S_pombe_snR95	RF01446	2	222	100	5	220	88	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR95
S_pombe_snR98	RF01447	2	212	100	2	212	100	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR98
S_pombe_snR93	RF01448	2	143	100	3	142	66	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR93
S_pombe_snR100	RF01449	3	185	66	5	185	71	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR100
S_pombe_snR96	RF01450	2	211	100	2	211	100	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR96
S_pombe_snR97	RF01451	3	147	100	3	147	100	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR97
S_pombe_snR99	RF01452	5	186	85	8	187	85	Gene; snRNA; snoRNA; HACA-box;	small nucleolar RNA snR99
RCNMV_TE_DR1	RF01453	3	138	91	3	138	91	Cis-reg;	3'TE-DR1 translation enhancer element
RCNMV_5UTR	RF01454	3	121	83	3	121	83	Cis-reg;	5'UTR enhancer element
DPB	RF01455	18	85	81	87	81	77	Cis-reg;	Stem loopII regulatory element in POLB
VrrA	RF01456	12	137	85	46	134	75	Gene; antisense;	Vibrio regulatory RNA of OmpA
rli22	RF01457	6	110	98	28	110	99	Gene; snRNA;	Listeria snRNA rli22
rli23	RF01458	7	98	78	72	97	68	Gene; antisense;	Listeria snRNA rli23
rliE	RF01459	4	222	83	22	223	92	Gene; snRNA;	Listeria snRNA rliE
rliH	RF01460	3	429	92	25	429	98	Gene; snRNA;	Listeria snRNA rliH
rli24	RF01461	6	158	94	23	158	96	Gene; snRNA;	Listeria snRNA rli22
rli26	RF01462	5	186	93	22	185	94	Gene; snRNA;	Listeria snRNA rli26
rli27	RF01463	3	99	96	25	99	96	Gene; snRNA;	Listeria snRNA rli27
rliA	RF01464	4	224	94	21	223	95	Gene; snRNA;	Listeria snRNA rliA
rli31	RF01465	3	115	90	25	115	98	Gene; snRNA;	rli31
rli34	RF01466	5	84	85	30	82	82	Gene; snRNA;	Listeria snRNA rli34
rli36	RF01467	6	84	96	25	80	98	Gene; snRNA;	Listeria snRNA rli36
rli32	RF01468	5	147	93	25	146	98	Gene; snRNA;	Listeria snRNA rli32
rli33	RF01469	3	533	94	27	513	78	Gene; snRNA;	Listeria snRNA rli33
rli38	RF01470	6	149	88	31	145	73	Gene; snRNA;	Listeria snRNA rli38
rliB	RF01471	4	358	66	33	314	62	Gene; snRNA;	Listeria snRNA rliB
rli40	RF01472	4	262	85	26	263	95	Gene; snRNA;	Listeria snRNA rli40
rli41	RF01473	6	494	94	25	494	97	Gene; snRNA;	Listeria snRNA rli41
rli42	RF01474	4	170	95	26	169	93	Gene; snRNA;	Listeia snRNA rli42
rli45	RF01475	6	77	86	25	78	92	Gene; antisense;	Listeria snRNA rli45
rliF	RF01476	5	212	76	31	210	78	Gene; snRNA;	Listeria snRNA rliF
rli43	RF01477	4	254	93	24	244	96	Gene; snRNA;	Listeria snRNA rli43
rli47	RF01478	9	508	98	26	503	98	Gene; snRNA;	Listeria snRNA rli47
rli48	RF01479	3	149	85	9	149	89	Gene; snRNA;	Listeria snRNA rli48
rli52	RF01480	6	95	95	23	95	98	Cis-reg; riboswitch;	Listeria snRNA rli52
rli53	RF01481	5	173	97	24	169	97	Cis-reg; riboswitch;	Listeria snRNA rli53
rli55	RF01482	3	283	99	24	283	100	Cis-reg; riboswitch;	Listeria snRNA rli55
rli56	RF01483	6	100	99	26	99	100	Cis-reg; riboswitch;	Listeria snRNA rli56
rli59	RF01484	5	181	96	25	180	98	Gene; snRNA;	Listeria snRNA rli59
rli61	RF01485	4	106	99	26	103	98	Cis-reg; riboswitch;	Listeria snRNA rli61
rli62	RF01486	2	172	98	5	172	99	Cis-reg; riboswitch;	Listeria snRNA rli62
rliI	RF01487	5	239	98	30	230	84	Gene; snRNA;	Listeria snRNA rliI
rli49	RF01488	5	163	94	38	157	78	Gene; snRNA;	Listeria snRNA rli49
sbrA	RF01489	6	70	92	31	70	93	Gene; snRNA;	Listeria snRNA sbrA
rli51	RF01490	9	120	92	323	120	98	Cis-reg;	Listeria snRNA rli51
rli54	RF01491	5	528	95	26	522	97	Cis-reg; riboswitch;	Listeria snRNA rli54
rli28	RF01492	22	183	54	332	182	50	Gene; snRNA;	Listeria snRNA rli28
rli37	RF01493	4	246	96	26	251	92	Gene; snRNA;	Listeria snRNA rli37
rliD	RF01494	9	327	97	45	273	73	Gene; sRNA;	Listeria sRNA rliD