Rfam 8.1 :: Browse Rfam families
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Name Accession No.seed Av.len(seed) Av.%id(seed) No.full Av.len(full) Av.%id(full) Type Description
5S_rRNARF00001602116571211711661Gene; rRNA;5S ribosomal RNA
5_8S_rRNARF0000263152688435815378Gene; rRNA;5.8S ribosomal RNA
U1RF000031001626385716168Gene; snRNA; splicing;U1 spliceosomal RNA
U2RF00004771846455117762Gene; snRNA; splicing;U2 spliceosomal RNA
tRNARF0000510887344854637245Gene; tRNA;tRNA
VaultRF0000611101712210375Gene;Vault RNA
U12RF000078161662116067Gene; snRNA; splicing;U12 minor spliceosomal RNA
Hammerhead_3RF000088455672525477Gene; ribozyme;Hammerhead ribozyme (type III)
RNaseP_nucRF00009592993611029843Gene; ribozyme;Nuclear RNase P
RNaseP_bact_aRF00010493725347331060Gene; ribozyme;Bacterial RNase P class A
RNaseP_bact_bRF00011313676016436968Gene; ribozyme;Bacterial RNase P class B
U3RF00012202095025720856Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA U3
6SRF00013771814217218243Gene;6S / SsrS RNA
DsrARF0001448589168593Gene; sRNA;DsrA RNA
U4RF00015301356027013764Gene; snRNA; splicing;U4 spliceosomal RNA
SNORD14RF00016181106621810864Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD14
SRP_euk_archRF00017502964643329240Gene;Eukaryotic type signal recognition particle RNA
CsrBRF000187357604335954Gene; sRNA;CsrB/RsmB RNA family
YRF00019169464127810167Gene;Y RNA
U5RF00020331195927311761Gene; snRNA; splicing;U5 spliceosomal RNA
Spot_42RF000216117842711790Gene; sRNA;Spot 42 RNA
GcvBRF0002217141662914064Gene;GcvB RNA
tmRNARF000231783644135035145Gene;tmRNA
Telomerase-vertRF0002437444556043058Gene;Vertebrate telomerase RNA
Telomerase-cilRF0002524181502217951Gene;Ciliate telomerase RNA
U6RF000265310478259910577Gene; snRNA; splicing;U6 spliceosomal RNA
let-7RF00027148068948273Gene; miRNA;let-7 microRNA precursor
Intron_gpIRF0002830322342008539753Intron;Group I catalytic intron
Intron_gpIIRF00029114865281897754Intron;Group II catalytic intron
RNase_MRPRF0003027270494526451Gene; ribozyme;RNase MRP
SECISRF000316364412996444Cis-reg;Selenocysteine insertion sequence
Histone3RF0003264267710462678Cis-reg;Histone 3' UTR stem-loop
MicFRF0003389280249182Gene; antisense;MicF RNA
RprARF000347109741910881Gene; sRNA;RprA RNA
OxySRF000355109901810693Gene; sRNA;OxyS RNA
RRERF000366533797397231187Cis-reg;HIV Rev response element
IRERF000373928613182962Cis-reg;Iron response element
PrfARF00038111318713013096Cis-reg; thermoregulator;PrfA thermoregulator UTR
DicFRF0003965173295274Gene; antisense;DicF RNA
rne5RF000409342662533676Cis-reg;RNase E 5' UTR element
Entero_OriRRF0004160121879611987Cis-reg;Enteroviral 3' UTR element
CopARF00042179083429084Gene; antisense;CopA-like RNA
Plasmid_R1162RF000433737297368Gene; antisense;R1162-like plasmid antisense RNA
Phage_pRNARF00044324498521576Gene;Bacteriophage pRNA
SNORA73RF0004523214747120771Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA73 family
snoR30RF0004669587309589Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R30/Z108
mir-2RF0004797067257071Gene; miRNA;mir-2 microRNA precursor
Entero_CRERF000485661822626181Cis-reg;Enterovirus cis-acting replication element
SNORD36RF000492074631297867Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD36
FMNRF00050341376718314465Cis-reg; riboswitch;FMN riboswitch (RFN element)
mir-17RF00051548170638269Gene; miRNA;mir-17 microRNA precursor family
lin-4RF0005296969397074Gene; miRNA;lin-4 microRNA precursor
mir-7RF0005368867298873Gene; miRNA;mir-7 microRNA precursor
SNORD25RF0005488062398167Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD25
SNORD96RF0005598760399066Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD96 family
SNORA71RF0005615131753712871Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA71
RyhBRF00057138274418372Gene; sRNA;RyhB RNA
HgcFRF00058316896516889Gene;HgcF RNA
TPPRF000591741095249610952Cis-reg; riboswitch;TPP riboswitch (THI element)
HgcERF00060313288513081Gene;HgcE RNA
IRES_HCVRF0006182126090341021090Cis-reg; IRES;Hepatitis C virus internal ribosome entry site
HgcCRF000624135623816660Gene;HgcC family RNA
SscARF000634968769675Gene;SscA RNA
HgcGRF00064227581623976Gene;HgcG RNA
snoR9RF00065312787512784Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snoR9
U7RF000662448693534969Gene; snRNA;U7 small nuclear RNA
SNORD15RF0006718124604911364Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD15
SNORD21RF0006859271128966Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD21
SNORD24RF000691477711028173Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD24
SNORD29RF00070107375197570Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD29
SNORD73RF0007146879156884Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD73
SNORA75RF000726135712313073Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA75
mir-156RF00073108971479368Gene; miRNA;mir-156 microRNA precursor
mir-29RF00074106774536780Gene; miRNA;mir-29 microRNA precursor
mir-166RF0007530122576312357Gene; miRNA;mir-166 microRNA precursor
mir-181RF0007647580257583Gene; miRNA;mir-181 microRNA precursor
SraBRF000773168851416890Gene; sRNA;SraB RNA
SraDRF0007837585257587Gene; sRNA;SraD RNA
SraE_OmrA_OmrBRF0007948877308682Gene; sRNA;SraE_OmrA_OmrB family RNA
yybP-ykoYRF00080501244414212445Cis-reg;yybP-ykoY leader
SraHRF000812109641910879Gene; sRNA;SraH RNA
SraGRF000825172722617382Gene; sRNA;SraG RNA
SraJRF000834173961617391Gene; sRNA;SraJ RNA
CsrCRF000844254711825478Gene; sRNA;CsrC RNA family
SNORD28RF000854796987773Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD28
SNORD27RF00086117668287769Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD27
SNORD26RF000874737587483Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD26
SNORD30RF0008837076107079Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD30
SNORD31RF0008946780126980Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD31
SNORA74RF00090319883919776Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA74
SNORA62RF0009110152822614871Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA62/SNORA6 family
SNORA63RF000928128803712671Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA63
SNORD18RF00093167468707660Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD18
HDV_ribozymeRF00094158991828896Gene; ribozyme;Hepatitis delta virus ribozyme
snoPyro_CDRF00095255660605658Gene; snRNA; snoRNA; CD-box;Pyrococcus C/D box small nucleolar RNA
U8RF000966134673813362Gene; snRNA; snoRNA; CD-box;U8 small nucleolar RNA
snoR71RF00097211079037010678Gene; snRNA; snoRNA; CD-box;Plant small nucleolar RNA R71
HACA_sno_SnakeRF0009822140935514090Gene; snRNA; snoRNA; HACA-box;Snake H/ACA box small nucleolar RNA
SNORD22RF00099312580912584Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD22
7SKRF0010063289617131771Gene;7SK RNA
SraC_RyeARF001014251721924276Gene; sRNA;SraC/RyeA RNA
VARF00102541616715715869Gene;VA RNA
mir-1RF0010377770277671Gene; miRNA;mir-1 microRNA precursor family
mir-10RF00104117458737368Gene; miRNA;mir-10 microRNA precursor family
SNORD115RF001052380921338190Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD115
RNAIRF00106101027513810372Gene; antisense;RNAI
FinPRF0010767790157791Gene;FinP
SNORD116RF0010879086859281Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD116
Vimentin3RF00109196874456682Cis-reg;Vimentin 3' UTR protein-binding region
RybBRF0011037979197989Gene; sRNA;RybB RNA
RyeBRF00111410095199791Gene; sRNA;RyeB RNA
RyeERF0011228561228480Gene; sRNA;RyeE RNA
QUADRF0011314148755014677Gene; sRNA;QUAD RNA
S15RF0011447117665111764Cis-reg; leader;Ribosomal S15 leader
IS061RF00115618092918093Gene; sRNA;IS061 RNA
C0465RF00116278991077100Gene; sRNA;C0465 RNA
C0719RF00117222299721099Gene; sRNA;C0719 RNA
rydBRF0011826791136796Gene; sRNA;rydB RNA
C0299RF0011927997117998Gene; sRNA;C0299 RNA
C0343RF0012027579147588Gene; sRNA;C0343 RNA
MicCRF001215121791512186Gene; sRNA;MicC RNA
GadYRF0012221141008114100Gene; sRNA;GadY
IS102RF001247205901320291Gene; sRNA;IS102 RNA
IS128RF001252209100520999Gene; sRNA;IS128 RNA
ryfARF001264299831330185Gene; sRNA;ryfA RNA
t44RF001277162772714572Gene; sRNA;t44 RNA
tke1RF001284149951815387Gene; sRNA;tke1 RNA
mir-103RF0012957887297885Gene; miRNA;mir-103/107 microRNA precursor
mir-192RF001304107701210674Gene; miRNA;mir-192/215 microRNA precursor
mir-30RF0013147182217083Gene; miRNA;mir-30 microRNA precursor
snoR24RF00132129281459281Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R24
snoZ195RF00133178372438566Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z195/SNORD33 family
snoZ196RF00134238268358371Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z196/R39/R59 family
snoZ223RF0013559483359082Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z223
SNORD81RF0013637690197682Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD81
SNORD83RF0013777684567685Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD83
SNORD16RF0013859880119881Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD16
SNORA72RF001397137831713682Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA72
Alpha_RBSRF0014015109714410969Cis-reg;Alpha operon ribosome binding site
snoZ118RF001427103834210381Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z118/Z121/Z120
mir-6RF001433777397780Gene; miRNA;mir-6 microRNA precursor
mir-199RF00144310081189988Gene; miRNA;mir-199 microRNA precursor
snoZ105RF0014557074176978Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z105
SNORD34RF0014797771347967Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD34
snoZ103RF0014999876429878Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z103
SNORD42RF0015076572146476Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD42
SNORD58RF0015136485206582Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD58
SNORD79RF001526858897483Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD79
SNORD62RF001533869088594Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD62
SNORD63RF001542698536890Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD63
SNORA66RF00155313398813286Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA66
SNORA70RF0015613135879013071Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA70
SNORD55RF0015747993157877Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD55/SNORD39
SNORD82RF0015837089106988Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD82
snoZ168RF0015968283188287Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z168/Z174
snoZ159RF00160108981378776Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z159/U59
nos_TCERF0016136389166390Cis-reg;Nanos 3' UTR translation control element
SAMRF00162481106729811066Cis-reg; riboswitch;SAM riboswitch (S box leader)
Hammerhead_1RF00163756561624771Gene; ribozyme;Hammerhead ribozyme (type I)
s2mRF001643842783024380Cis-reg;Coronavirus 3' stem-loop II-like motif (s2m)
Corona_pk3RF00165146268856270Cis-reg;Coronavirus 3' UTR pseudoknot
PrrB_RsmZRF0016612157751715776Gene; sRNA;PrrB/RsmZ RNA family
PurineRF0016722995412210256Cis-reg; riboswitch;Purine riboswitch
LysineRF00168431824811218249Cis-reg; riboswitch;Lysine riboswitch
SRP_bactRF001696294512859850Gene;Bacterial signal recognition particle RNA
msrRF0017087054127158Gene;Retron msr RNA
Tombus_5RF001719161754010858Cis-reg;Tombusvirus 5' UTR
CAESARRF0017297978417883Cis-reg;ctgf/hcs24 CAESAR
HairpinRF001733517855182Gene; ribozyme;Hairpin ribozyme
CobalaminRF001741282054730620447Cis-reg; riboswitch;Cobalamin riboswitch
Retroviral_psiRF0017517311791136410584Cis-reg;Retroviral Psi packaging element
Tombus_3_IVRF00176189193776495Cis-reg;Tombusvirus 3' UTR region IV
SSU_rRNA_5RF001773584774734348749Gene; rRNA;Small subunit ribosomal RNA, 5' domain
mir-24RF0017836780216786Gene; miRNA;mir-24 microRNA precursor family
GAITRF0017987099117196Cis-reg;GAIT element
REN-SRERF00180133689303790Cis-reg;Renin stability regulatory element (REN-SRE)
SNORD113RF00181597467817565Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD113/SNORD114 family
Corona_packageRF0018215129842312982Cis-reg;Coronavirus packaging signal
G-CSF_SLDERF00183693100199486Cis-reg;G-CSF factor stem-loop destabilising element (SLDE)
PVX_3RF0018435495215497Cis-reg;Potato virus X cis-acting regulatory element
Flavi_CRERF001858494653039569Cis-reg;Flavivirus 3' UTR cis-acting replication element (CRE)
SNORD101RF0018637310067389Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD101
SNORD102RF0018727210047194Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD102
SNORD103RF001883909558996Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD103
SNORD95RF0018956796126881Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD95
SNORA16RF001903133811413378Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA16B/SNORA16A family
SNORA57RF001913148931014584Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA57
BLV_packageRF001925559655596Cis-reg;Bovine leukaemia virus RNA packaging signal
CTV_rep_sigRF001939273982425891Cis-reg;Citrus tristeza virus replication signal
Rubella_3RF00194256695936397Cis-reg;Rubella virus 3' cis-acting element
RsmYRF00195412278912183Gene; sRNA;RsmY RNA family
AMV_RNA1_SLRF001964359583596Cis-reg;Alfalfa mosaic virus RNA 1 5' UTR stem-loop
RbcL_stabilRF0019734595254568Cis-reg;rbcL 5' UTR RNA stabilising element
SL1RF0019832103859810374Gene;SL1 RNA
SL2RF0019932110763710973Gene;SL2 RNA
snoZ199RF00200178281388379Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z199
snoZ278RF002017114941911494Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z278
snoR66RF0020267487357389Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R66
snoR160RF0020397973217877Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R160
snoR12RF0020498379668083Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R12
snoR41RF0020579488159584Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R41
U54RF00206228169458070Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA U54
K10_TLSRF00207344100644100Cis-reg;K10 transport/localisation element (TLS)
snoR72RF0020848797108798Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R72
IRES_PestiRF00209252758899724980Cis-reg; IRES;Pestivirus internal ribosome entry site (IRES)
IRES_ApthoRF00210924618218846172Cis-reg; IRES;Aphthovirus internal ribosome entry site (IRES)
SNORD35RF0021188872178877Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD35
SNORD38RF0021276880236976Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD38
snoR38RF00213198558508458Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R38
Retro_dr1RF002142690891248986Cis-reg;Retrovirus direct repeat 1 (dr1)
Tombus_3_IIIRF00215286979666979Cis-reg;Tombus virus defective interfering (DI) RNA region 3
IRES_c-mycRF0021623302985429680Cis-reg; IRES;c-myc internal ribosome entry site (IRES)
SNORD20RF0021748099680100Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD20
SNORD46RF0021898969278771Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD46
SNORD32RF0021948191218290Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD32
Rhino_CRERF00220128681608572Cis-reg;Human rhinovirus internal cis-acting regulatory element (CRE)
SNORD43RF0022177662198562Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD43
IRES_Bag1RF002224370991534986Cis-reg; IRES;Bag-1 internal ribosome entry site (IRES)
IRES_BipRF0022342441001023675Cis-reg; IRES;bip internal ribosome entry site (IRES)
IRES_FGF2RF00224349799943595Cis-reg; IRES;FGF-2 internal ribosome entry site (IRES)
IRES_TobamoRF002257151871115287Cis-reg; IRES;Tobamovirus internal ribosome entry site (IRES)
IRES_n-mycRF002266323722926958Cis-reg; IRES;n-myc internal ribosome entry site (IRES)
FIE3RF0022756765106578Cis-reg;FIE3 (ftz instability element 3') element
IRES_HepARF00228235719613738995Cis-reg; IRES;Hepatitis A virus internal ribosome entry site (IRES)
IRES_PicornaRF0022920825185151220580Cis-reg; IRES;Picornavirus internal ribosome entry site (IRES)
T-boxRF002301032254272222446Cis-reg;T-box leader
SCARNA13RF00231327487727386Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 13
Spi-1RF002325164911016590Cis-reg;Spi-1 (PU.1) 5' UTR regulatory element
Tymo_tRNA-likeRF00233288268827865Cis-reg;Tymovirus/Pomovirus tRNA-like 3' UTR element
glmSRF0023411182554418660Cis-reg; riboswitch;glmS glucosamine-6-phosphate activated ribozyme
Plasmid_RNAIIIRF00235712994913095Gene;Plasmid RNAIII
ctRNA_pGA1RF00236157773217871Gene; antisense;ctRNA
mir-9RF0023756280346185Gene; miRNA;mir-9/mir-79 microRNA precursor family
ctRNA_pND324RF00238488572528571Gene; antisense;ctRNA
mir-124RF0023968173258085Gene; miRNA;mir-124 microRNA precursor family
RNA-OUTRF00240469851727096Gene;RNA-OUT
mir-8RF0024197765247764Gene; miRNA;mir-8/mir-141/mir-200 microRNA precursor family
ctRNA_pT181RF00242169679219577Gene; antisense;ctRNA
traJ_5RF002436108861510888Cis-reg;traJ 5' UTR
mir-26RF0024457274247380Gene; miRNA;mir-26 microRNA precursor family
mir-19RF0024537576437582Gene; miRNA;mir-19 microRNA precursor family
mir-135RF0024659072229076Gene; miRNA;mir-135 microRNA precursor family
mir-160RF0024779466339465Gene; miRNA;mir-160 microRNA precursor family
mir-148RF002485867298671Gene; miRNA;mir-148/mir-152 microRNA precursor family
mir-46RF002494766987678Gene; miRNA;mir-46/mir-47/mir-281 microRNA precursor family
TARRF00250426568920045691Cis-reg;Trans-activation response element (TAR)
mir-219RF0025177182317280Gene; miRNA;mir-219 microRNA precursor family
Alfamo_CPBRF0025218182892315990Cis-reg;Alfalfa mosaic virus coat protein binding (CPB) RNA
mir-101RF0025347585207589Gene; miRNA;mir-101 microRNA precursor family
mir-16RF00254128073378076Gene; miRNA;mir-16 microRNA precursor family
mir-218RF0025539677239679Gene; miRNA;mir-218 microRNA precursor family
mir-196RF00256149073459174Gene; miRNA;mir-196 microRNA precursor family
mir-194RF0025748473138579Gene; miRNA;mir-194 microRNA precursor family
mir-130RF0025838274158273Gene; miRNA;mir-130 microRNA precursor family
IFN_gammaRF002595168901316085Cis-reg;Interferon gamma 5' UTR regulatory element
HepC_CRERF002605251873485187Cis-reg;Hepatitis C virus (HCV) cis-acting replication element (CRE)
IRES_L-mycRF00261321994522095Cis-reg; IRES;L-myc internal ribosome entry site (IRES)
sarRF002624689176588Gene; antisense;sar RNA
SNORA68RF002634131841212777Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA68
SNORA64RF002649133711713269Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA64/SNORA10 family
SNORA69RF00265312891913277Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA69
snoZ17RF002664728287179Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z17
snoR64RF00267119467249470Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R64/Z200 family
snoZ7RF002683789498082Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snoZ7/snoR77
SNORD61RF002703729267187Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD61
SNORD60RF002713788398187Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD60
SNORA67RF0027210141812113973Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA67
SNORD59RF0027347079117283Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD59
SNORD57RF002743678756989Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD57
SNORD56RF0027577080147083Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD56
SNORD52RF0027646686196681Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD52
SNORD49RF0027747175106874Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD49
SNORD50RF0027867181127083Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD50
SNORD45RF00279117479187580Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD45
SNORD51RF002803758547588Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD51
SNORD47RF0028137390117488Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD47
SNORD48RF0028236387136392Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD48
SCARNA18RF0028347890188087Gene; snRNA; snoRNA; scaRNA;small Cajal body-specific RNA 18
SNORD74RF0028448088197677Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD74
snoZ6RF0028539193188678Gene; snRNA; snoRNA; CD-box;Z6 small nucleolar RNA
SCARNA8RF00286312690512881Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 8
SNORD44RF002873608756092Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD44
snoZ30RF0028849692129784Gene; snRNA; snoRNA; CD-box;Z30 small nucleolar RNA
SNORND104RF002893708657087Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD104
BaMV_CRERF0029041409914140100Cis-reg;Bamboo mosaic potexvirus (BaMV) cis-regulatory element
snoR639RF0029131361006138100Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA snoR639/H1
snoTBR5RF002923907659080Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA TBR5
snoM1RF002933998989991Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA snoM1
snoTBR17RF00294528485827076Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA TBR17
snoTBR7RF002956758597481Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA TBR7
snoR16RF00296178678188477Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R16
snoZ221RF00300311396711296Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z221
snoZ256RF0030159383109476Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z256
SNORA65RF00302812584912382Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA65
snoR86RF00303312588312588Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA snoR86
snoZ279RF00304311192711194Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z279
snoZ248RF003054137981013798Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z248
snoZ178RF0030641521006152100Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z178
snoR98RF00307410886511088Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA snoR98
snosnR60_Z15RF00309239363439364Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR60/Z15/Z230/Z193/J17
snoZ165RF003103899489095Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z165
snoZ188RF003117120742011977Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z188
snoZ206RF003123131931213089Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z206
snoZ173RF003133106995106100Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z173
snoZ182RF003144899698896Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z182
snoJ33RF0031537979248068Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA J33
snoR43RF00316167287207383Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R43
snoZ163RF0031778982158884Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z163/Z177 family
snoZ175RF0031838199581100Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z175
SNORA23RF00319518293718283Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA23
snoZ185RF003202859888492Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z185
snoZ247RF003218136823213770Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z247
SNORA31RF00322512585812788Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA31
snoR79RF003234649996396Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R79
snoMBII-202RF0032457696117880Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA MBII-202
SNORD53RF003253749287682Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD53
snoZ155RF0032687779147881Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z155
snoZ194RF00327310699710699Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z194
snoZ161_228RF0032878979159283Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z161/Z228
snoZ162RF003293878978890Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z162
snoZ43RF0033049988139982Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z43
snoZ169RF003313698786689Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z169
snoZ266RF0033248686228781Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z266
snoZ157RF00333109775269773Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z157/R69/R10
SNORA3RF003346128743112871Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA3/SNORA45 family
snoZ13_snr52RF0033549774109575Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z13/snr52
snoJ26RF003365149951814691Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA J26
snoZ112RF003373181962918291Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z112
snoR53RF003383899438994Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR53
snoR60RF0033937482267384Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snoR60
SNORA36RF003406128852513180Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA36 family
snoZ39RF003415618886188Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z39
snoZ40RF0034257294117389Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z40
snoZ122RF0034338681168475Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z122
snoZ267RF0034457281127378Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z267
snoR1RF0034579476209579Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snoR1
SNORD85RF003473649046593Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD85
snoR9_plantRF003487129823212676Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snoR9
snoR11RF0034959186199185Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R11/Z151
snoZ152RF00350410078129881Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z152/R70/R12/
snoR20RF003513919049192Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R20
snoR21RF003524828788289Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R21
snoR31_Z110_Z27RF0035389467359586Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snoR31/Z110/Z27
snoR28RF0035547497117494Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snoR28
snoR32_R81RF003566958389585Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R32/R81/Z41
snoR44_J54RF00357199570399770Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R44/J54/Z268 family
snoZ101RF0035839898189472Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z101
snoZ102_R77RF0035948585118689Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z102/R77
snoZ107_R87RF003606117853811281Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z107/R87
snoZ119RF0036139694129794Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z119
Pospi_RYRF003621679921757789Cis-reg;Pospiviroid RY motif stem loop
mir-BART1RF003633709047093Gene; miRNA;mir-BART1 microRNA precursor family
mir-BART2RF0036486193146093Gene; miRNA;mir-BART2 microRNA precursor family
mir-BHRF1-1RF003653669566697Gene; miRNA;mir-BHRF1-1 microRNA precursor family
mir-BHRF1-2RF003664658296590Gene; miRNA;mir-BHRF1-2 microRNA precursor family
mir-BHRF1-3RF00367365100665100Gene; miRNA;mir-BHRF1-3 microRNA precursor family
sroBRF0036847887178187Gene; sRNA;sroB RNA
sroCRF003694162811416286Gene; sRNA;sroC RNA
sroDRF0037038693178695Gene; sRNA;sroD RNA
sroERF0037139193148995Gene; sRNA;sroE RNA
sroHRF003724160997160100Gene; sRNA;sroH RNA
RNaseP_archRF0037334308529726364Gene; ribozyme;Archaeal RNase P
Gammaretro_CESRF00374231008914110192Cis-reg;Gammaretrovirus core encapsidation signal
HIV_PBSRF00375388999316099479Cis-reg;HIV primer binding site (PBS)
HIV_GSL3RF003761403848869238187Cis-reg;HIV gag stem loop 3 (GSL3)
snoU6-53RF00377410582810683Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA U6-53/MBII-28
QrrRF003786108822510379Gene; sRNA;Qrr RNA
ydaO-yuaARF0037925143588015555Cis-reg;ydaO/yuaA leader
ykoKRF0038036167595716861Cis-reg;ykoK leader
Antizyme_FSERF00381135784535787Cis-reg; frameshift_element;Antizyme RNA frameshifting stimulation element
DnaXRF0038236572206585Cis-reg; frameshift_element;DnaX ribosomal frameshifting element
IS1222_FSERF003836117931311795Cis-reg; frameshift_element;Insertion sequence IS1222 ribosomal frameshifting element
Pox_AX_elementRF0038476293226296Cis-reg;Poxvirus AX element late mRNA cis-regulatory element
IBV_D-RNARF00385104194414196Cis-reg;Infectious bronchitis virus D-RNA
Entero_5_CRERF0038616089832878884Cis-reg;Enterovirus 5' cloverleaf cis-acting replication element
IRES_FGF1RF003876165871016684Cis-reg; IRES;FGF-1 internal ribosome entry site (IRES)
QaRNARF00388510370710373Gene; antisense;Qa RNA
satBaMV_CRERF0038942158937415794Cis-reg;Bamboo mosaic virus satellite RNA cis-regulatory element
UPSKRF0039042393252397Cis-reg;UPSK RNA
RtTRF0039116170759116967Cis-reg;RtT RNA
SNORA5RF003926134751213175Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA5
SNORA8RF003935139901413586Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA8
SNORA4RF003947140761313876Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA4
SNORA13RF00396313287813287Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA13
SNORA14RF00397313493613492Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA14
SNORA15RF00398412787912884Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA15
SNORA24RF003995129891712574Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA24
SNORA28RF00400312495312495Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA28
SNORA20RF0040117129873412888Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA20
SNORA25RF004029126832912874Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA25
SNORA41RF00403612889812988Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA41
SNORA46RF00404313484812582Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA46
SNORA44RF004056126851712781Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA44
SNORA42RF0040621134794613377Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA42/SNORA80 family
SNORA50RF00407313598413598Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA50
SNORA1RF004086133851113287Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA1
SNORA7RF004098138844513770Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA7
SNORA2RF0041018135752713472Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA2/SNORA34 family
SNORA9RF004116132891413087Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA9
SNORA21RF004125133881313386Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA21
SNORA19RF00413411193912191Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA19
SNORA22RF00414513590613591Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA22
SNORA30RF0041511129731412972Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA30/SNORA37 family
SNORA43RF004167136792013572Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA43
SNORA56RF00417413096712998Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA56
SNORA58RF00418413384713486Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA58
SNORA52RF00419413480913575Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA52
SNORA61RF004204129811512877Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA61
SNORA32RF004219121843311678Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA32
SCARNA24RF00422313284713384Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 24
SCARNA4RF004233126861212787Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 4
SCARNA16RF00424618687918281Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 16
SNORA18RF004256129841912679Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA18
SCARNA15RF00426312691812496Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 15
SCARNA23RF00427312690412692Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 23
SNORA38RF004285131862613284Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA38
SNORA29RF004293134851013781Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA29
SNORA54RF004305127601012674Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA54
SNORA55RF004313132891412684Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA55
SNORA51RF004329132823513174Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA51
Hsp90_CRERF00433415297715298Cis-reg; thermoregulator;Hsp90 cis-regulatory element
BTERF0043417101713210173Cis-reg;Luteovirus cap-independent translation element (BTE)
ROSERF004351310159209464Cis-reg; thermoregulator;Repression of heat shock gene expression (ROSE) element
UnaL2RF0043630547752555478Cis-reg;UnaL2 LINE 3' element
HLERF004374131982013088Cis-reg;Hairy RNA localisation element (HLE)
SNORA33RF004385124831112577Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA33
SNORD87RF004394779678193Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD87
SNORD37RF0044076381116478Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA SNORD37
snoZ242RF004414197871119182Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA Z242
ykkC-yxkDRF0044211105603510662Cis-reg;ykkC-yxkD leader
SNORA27RF004433128901112787Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA SNORA27
PrrFRF004445149861414884Gene; sRNA;PrrF RNA
mir-399RF0044513113594111357Gene; miRNA;mir-399 microRNA precursor family
mir-133RF0044698875278882Gene; miRNA;mir-133 microRNA precursor family
IRES_Kv1_4RF00447625689925591Cis-reg; IRES;Voltage-gated potassium-channel Kv1.4 IRES
IRES_EBNARF004484212811421465Cis-reg; IRES;Epstein-Barr virus nuclear antigen (EBNA) IRES
IRES_HIF1RF004497272841227084Cis-reg; IRES;HIF-1 alpha IRES
snoR105_108RF00450710378710378Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA R105/R108
mir-395RF0045121102641079964Gene; miRNA;mir-395 microRNA precursor family
mir-172RF004528114621911366Gene; miRNA;mir-172 microRNA precursor family
Cardiovirus_CRERF00453123382303385Cis-reg;Cardiovirus cis-acting replication element (CRE)
p27_CRERF004544579195892Cis-reg;p27 cis-regulatory element
mir-15RF0045548569298580Gene; miRNA;mir-15 microRNA precursor family
mir-34RF00456188774208771Gene; miRNA;mir-34 microRNA precursor family
IRES_mntRF00457420397720397Cis-reg; IRES;Mnt IRES
IRES_CripavirusRF00458719854819856Cis-reg; IRES;Cripavirus internal ribosome entry site (IRES)
MPMV_packageRF004594277841427480Cis-reg;Mason-Pfizer monkey virus packaging signal
U1A_PIERF0046087477277480Cis-reg;U1A polyadenylation inhibition element (PIE)
IRES_VEGF_ARF004617303901330592Cis-reg; IRES;Vascular endothelial growth factor (VEGF) IRES A
IRES_APCRF004626538585385Cis-reg; IRES;APC internal ribosome entry site (IRES)
ApoB_5_CRERF004633125861211895Cis-reg;Apolipoprotein B (apoB) 5' UTR cis-regulatory element
mir-92RF00464337964457963Gene; miRNA;mir-92 microRNA precursor family
JEV_hairpinRF004652059862135984Cis-reg;Japanese encephalitis virus (JEV) hairpin structure
RSV_PBSRF004672375931017283Cis-reg;Rous sarcoma virus (RSV) primer binding site (PBS)
HCV_SLVIIRF0046811065744976579Cis-reg;Hepatitis C virus stem-loop VII
HCV_SLIVRF0046911036863443789Cis-reg;Hepatitis C stem-loop IV
Toga_5_CRERF0047033266807825573Cis-reg;Togavirus 5' plus strand cis-regulatory element
snosnR48RF00471610875810979Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR48
snosnR55RF004726897598875Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR55/Z10
snosnR54RF0047398576168177Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR54
snosnR57RF004746907589176Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR57
snosnR69RF0047579663149561Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR69
snosnR61RF00476178369208269Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR61/Z1/Z11
snosnR66RF00477510072910082Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR66
SCARNA6RF00478426186926563Gene; snRNA; snoRNA; scaRNA;Small Cajal body specific RNA 6
snosnR71RF004797927479274Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA snR71
HIV_FERF00480853528844375190Cis-reg; frameshift_element;HIV Ribosomal frameshift signal
HCV_X3RF004812299967710097Cis-reg;Hepatitis C virus 3'X element
snoF1_F2RF004828139861913685Gene; snRNA; snoRNA; HACA-box;Small nucleolar RNA F1/F2/snoR5a
IRES_IGF2RF004839120943611895Cis-reg; IRES;Insulin-like growth factor II IRES
IRES_Cx32RF004846144931114793Cis-reg; IRES;Connexin-32 internal ribosome entry site (IRES)
K_chan_RESRF00485851146836411365Cis-reg;Potassium channel RNA editing signal
mir-129RF0048669083109182Gene; miRNA;mir-129 microRNA precursor family
IRES_Cx43RF0048714198873019580Cis-reg; IRES;Connexin-43 internal ribosome entry site (IRES)
U1_yeastRF00488556663955363Gene; snRNA; splicing;Yeast U1 spliceosomal RNA
ctRNA_p42dRF00489147674337666Gene; antisense;ctRNA
S-elementRF00490126879246877Cis-reg;S-element
SVLPARF0049165396385499Cis-reg;Simian virus 40 late polyadenylation signal (SVLPA)
SCARNA17RF004926141761614182Gene; snRNA; snoRNA; scaRNA;small Cajal body-specific RNA 17
snoU2-30RF004933709576987Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA U2-30
snoU2_19RF004944808977887Gene; snRNA; snoRNA; CD-box;Small nucleolar RNA U2-19
IRES_Hsp70RF0049514211803820981Cis-reg; IRES;Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES)
Corona_SL-IIIRF0049654293134296Cis-reg;Coronavirus SL-III cis-acting replication element (CRE)
EAV_LTHRF0049844598124599Cis-reg;Equine arteritis virus leader TRS hairpin (LTH)
Parecho_CRERF00499511187611286Cis-reg;Human parechovirus 1 (HPeV1) cis regulatory element (CRE)
TCV_H5RF005003459654597Cis-reg;Turnip crinkle virus (TCV) repressor of minus strand synthesis H5
Rota_CRERF00501146787176786Cis-reg;Rotavirus cis-acting replication element (CRE)
TCV_PrRF005024529455295Cis-reg;Turnip crinkle virus (TCV) core promoter hairpin (Pr)
RNAIIIRF0050312496871650687Gene;RNAIII
GlycineRF00504931035021710250Cis-reg; riboswitch;Glycine riboswitch
RydCRF0050526580126491Gene; sRNA;RydC RNA
Thr_leaderRF0050624121803312481Cis-reg;Threonine operon leader
Corona_FSERF005072382661838280Cis-reg; frameshift_element;Coronavirus frameshifting stimulation element
snosnR64